API for ashr
Methods for Adaptive Shrinkage, using Empirical Bayes
| Global functions | |
|---|---|
| ColsumModified | Source code |
| VB.update | Source code |
| VBfixpoint | Source code |
| VBnegpenloglik | Source code |
| VBpenloglik | Source code |
| add_etruncFUN | Source code |
| add_list | Source code |
| ash | Man page |
| ash.estmode | Source code |
| ash.workhorse | Man page Source code |
| ash_pois | Man page Source code |
| ashci | Man page |
| ashr | Man page |
| ashr-package | Man page |
| autoselect.mixsd | Source code |
| calc_flash_data | Source code |
| calc_lfdr | Source code |
| calc_lfsr | Source code |
| calc_logLR | Man page Source code |
| calc_loglik | Man page Source code |
| calc_mixmean | Man page Source code |
| calc_mixmean.default | Source code |
| calc_mixsd | Man page Source code |
| calc_mixsd.default | Source code |
| calc_np | Source code |
| calc_null_loglik | Man page Source code |
| calc_null_vloglik | Man page Source code |
| calc_pm | Source code |
| calc_pp | Source code |
| calc_psd | Source code |
| calc_qvalue | Source code |
| calc_svalue | Source code |
| calc_vlogLR | Man page Source code |
| calc_vloglik | Man page Source code |
| cdf.ash | Man page Source code |
| cdf_conv | Man page |
| cdf_post | Man page Source code |
| cdf_post.default | Source code |
| check_args | Source code |
| check_lik | Source code |
| comp_cdf | Man page Source code |
| comp_cdf.default | Source code |
| comp_cdf.igmix | Source code |
| comp_cdf.unimix | Source code |
| comp_cdf_conv | Man page |
| comp_cdf_conv.default | Source code |
| comp_cdf_conv.normalmix | Man page |
| comp_cdf_conv.unimix | Man page |
| comp_cdf_post | Man page Source code |
| comp_cdf_post.default | Source code |
| comp_cdf_post.igmix | Source code |
| comp_cdf_post.normalmix | Source code |
| comp_cdf_post.unimix | Source code |
| comp_dens | Man page Source code |
| comp_dens.default | Source code |
| comp_dens.igmix | Source code Source code |
| comp_dens.unimix | Source code |
| comp_dens_conv | Man page Source code |
| comp_dens_conv.default | Source code |
| comp_dens_conv.igmix | Source code |
| comp_dens_conv.normalmix | Man page Source code |
| comp_dens_conv.unimix | Man page Source code |
| comp_mean | Man page Source code |
| comp_mean.default | Source code |
| comp_mean.igmix | Source code |
| comp_mean.normalmix | Man page Source code |
| comp_mean.tnormalmix | Man page |
| comp_mean.unimix | Source code |
| comp_mean2 | Man page Source code |
| comp_mean2.default | Source code |
| comp_postmean | Man page Source code |
| comp_postmean.default | Source code |
| comp_postmean.igmix | Source code |
| comp_postmean.normalmix | Source code |
| comp_postmean.unimix | Source code |
| comp_postmean2 | Man page Source code |
| comp_postmean2.default | Source code |
| comp_postmean2.normalmix | Source code |
| comp_postmean2.unimix | Source code |
| comp_postprob | Man page Source code |
| comp_postprob.default | Source code |
| comp_postsd | Man page Source code |
| comp_postsd.default | Source code |
| comp_postsd.igmix | Source code |
| comp_postsd.normalmix | Source code |
| comp_sd | Man page Source code |
| comp_sd.default | Source code |
| comp_sd.igmix | Source code |
| comp_sd.normalmix | Man page Source code |
| comp_sd.tnormalmix | Man page Source code |
| comp_sd.unimix | Source code |
| compute_lfsr | Man page Source code |
| constrain_mix | Source code |
| cxxMixSquarem | Man page Source code |
| dens | Man page Source code |
| dens.default | Source code |
| dens_conv | Man page Source code |
| dens_conv.default | Source code |
| diriKL | Source code |
| dlogf | Man page Source code |
| do_truncnorm_argchecks | Source code |
| effective.effect | Source code |
| estimate_mixprop | Man page |
| etrunclogf | Source code |
| etrunclogf_denom | Source code |
| etrunclogf_num | Source code |
| extract_data | Source code |
| fixpoint | Source code |
| gen_etruncFUN | Man page Source code |
| gen_etruncFUN_single | Source code |
| get_density | Man page Source code |
| get_exclusions | Source code |
| get_fitted_g | Man page Source code |
| get_lfdr | Man page Source code |
| get_lfsr | Man page Source code |
| get_logLR | Man page Source code |
| get_loglik | Man page Source code |
| get_name | Source code |
| get_np | Man page Source code |
| get_pi0 | Man page Source code |
| get_pm | Man page Source code |
| get_post_sample | Man page Source code |
| get_pp | Man page Source code |
| get_psd | Man page Source code |
| get_qvalue | Man page Source code |
| get_svalue | Man page Source code |
| gradient | Source code |
| igmix | Man page Source code |
| initpi | Source code |
| is_const | Source code |
| is_normal | Source code |
| lik_binom | Man page Source code |
| lik_logF | Man page Source code |
| lik_normal | Man page Source code |
| lik_normalmix | Man page Source code |
| lik_pois | Man page Source code |
| lik_t | Man page Source code |
| log_comp_dens_conv | Man page Source code |
| log_comp_dens_conv.default | Source code |
| log_comp_dens_conv.normalmix | Man page Source code |
| log_comp_dens_conv.unimix | Man page Source code |
| loglik | Source code |
| loglik.default | Source code |
| loglik_conv | Man page Source code |
| loglik_conv.default | Man page Source code |
| logscale_sub | Source code |
| matrix_dens | Source code |
| max_lim | Source code |
| max_lim.default | Source code |
| min_lim | Source code |
| min_lim.default | Source code |
| mixEM | Man page Source code |
| mixIP | Man page Source code |
| mixSQP | Man page |
| mixVBEM | Man page Source code |
| mixcdf | Man page Source code |
| mixcdf.default | Man page Source code |
| mixmean2 | Man page Source code |
| mixmean2.default | Source code |
| mixprop | Man page Source code |
| mixprop.default | Source code |
| my_e2truncbeta | Man page Source code |
| my_e2truncgamma | Man page Source code |
| my_e2truncnorm | Man page Source code |
| my_e2trunct | Man page Source code |
| my_etruncbeta | Man page Source code |
| my_etruncgamma | Man page Source code |
| my_etrunclogf | Man page Source code |
| my_etruncnorm | Man page Source code |
| my_etrunct | Man page Source code |
| my_vtruncnorm | Man page Source code |
| n_obs | Source code |
| ncomp | Man page Source code |
| ncomp.default | Man page Source code |
| negpenloglik | Source code |
| normalize | Source code |
| normalmix | Man page Source code |
| pcdf_post | Man page Source code |
| penalty | Source code |
| penloglik | Source code |
| plogf | Man page Source code |
| plot.ash | Man page Source code |
| plot_dens | Source code |
| plot_dens.default | Source code |
| plot_diagnostic | Man page |
| plot_post_cdf | Source code |
| plot_post_cdf.default | Source code |
| pm_on_zero | Man page Source code |
| pm_on_zero.default | Source code |
| post_sample | Man page Source code |
| post_sample.default | Source code |
| post_sample.normalmix | Man page Source code |
| post_sample.unimix | Man page Source code |
| posterior_dist | Man page Source code |
| postmean | Man page Source code |
| postmean.default | Source code |
| postmean2 | Man page Source code |
| postmean2.default | Source code |
| postsd | Man page Source code |
| postsd.default | Source code |
| print.ash | Man page Source code |
| prune | Man page Source code |
| prune.default | Source code |
| qval.from.lfdr | Man page Source code |
| set_control_mixIP | Source code |
| set_control_squarem | Source code |
| set_data | Man page Source code |
| set_optmethod | Source code |
| set_output | Source code |
| set_resfns | Source code |
| setprior | Source code |
| summary.ash | Man page Source code |
| taildiff | Source code |
| tnormalmix | Man page |
| unimix | Man page Source code |
| vcdf_post | Man page Source code |
| w_fixpoint | Source code |
| w_mixEM | Man page Source code |
| w_negpenloglik | Source code |
| w_penloglik | Source code |
| xdtrunclogf | Source code |
