bakRFnData: bakRFnData object helper function for users

In bakR: Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets

bakRFnData object helper function for users

Description

This function creates an object of class bakRFnData

Usage

bakRFnData(fns, metadf)

Arguments

fns	Dataframe with columns corresponding to sample names (sample), feature IDs (XF), fraction new estimates (fn), and number of sequencing reads (nreads). fns can optionally contain a column of fraction new estimate uncertainties (se).
metadf	Dataframe detailing s4U label time and experimental ID of each sample. Identical to bakRData input

Value

A bakRFnData object. This has two components: a data frame describing experimental details (metadf) and a data frame containing the fraction new estimates (fns).

Examples

### NEED TO ADD EXAMPLE DATA
# Load cB
data("cB_small")

# Load metadf
data("metadf")

# Create bakRData object
bakRData <- bakRData(cB_small, metadf)

bakR documentation built on June 22, 2024, 6:55 p.m.