cB_small: Example cB data frame

In bakR: Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets

Example cB data frame

Description

Subset of a cB file from the DCP2 dataset published in Luo et al. 2020. The original file is large (69 MB), so the example cB file has been downsampled and contains only 10 genes (rather than 25012). The columns are described in the Getting_Started vignette.

Usage

data(cB_small)

Format

A dataframe with 5788 rows and 5 variables; each row corresponds to a group of sequencing reads

sample

Sample name

TC

Number of T-to-C mutations

nT

Number of Ts

XF

Name of feature to which the group of reads map; usually a gene name

n

Number of identical sequencing reads

References

Luo et al. (2020) Biochemistry. 59(42), 4121-4142

Examples

data(cB_small)
data(metadf)
bakRdat <- bakRData(cB_small, metadf)

bakR documentation built on June 22, 2024, 6:55 p.m.