| .rlang_as_friendly_type |
Source code
|
| .rlang_check_is_string |
Source code
|
| .rlang_stop_unexpected_typeof |
Source code
|
| .stop_not_number |
Source code
|
| add_quotes_if_has_spaces |
Man page
Source code
|
| are_beast2_input_lines |
Man page
Source code
|
| are_beast2_input_lines_deep |
Man page
Source code
|
| are_beast2_input_lines_fast |
Man page
Source code
|
| are_identical_alignments |
Man page
Source code
|
| beast2_options_to_table |
Man page
Source code
|
| beastier |
Man page
|
| beastier-package |
Man page
|
| beastier_report |
Man page
Source code
|
| check_arg |
Source code
|
| check_beast2 |
Man page
Source code
|
| check_beast2_options |
Man page
Source code
|
| check_beast2_options_data_types |
Man page
Source code
|
| check_beast2_options_do_not_overwrite_existing_files |
Man page
Source code
|
| check_beast2_options_filenames_differ |
Man page
Source code
|
| check_beast2_options_names |
Man page
Source code
|
| check_beast2_optionses |
Man page
Source code
|
| check_beast2_path |
Man page
Source code
|
| check_bool |
Source code
|
| check_call |
Source code
|
| check_can_create_dir_for_state_output_file |
Man page
Source code
|
| check_can_create_file |
Man page
Source code
|
| check_can_create_screenlog_file |
Man page
Source code
|
| check_can_create_state_output_file |
Man page
Source code
|
| check_can_create_tracelog_file |
Man page
Source code
|
| check_can_create_treelog_file |
Man page
Source code
|
| check_character |
Source code
|
| check_closure |
Source code
|
| check_data_frame |
Source code
|
| check_empty_beastier_folder |
Man page
Source code
|
| check_empty_beaustier_folders |
Man page
Source code
|
| check_environment |
Source code
|
| check_false |
Source code
|
| check_formula |
Source code
|
| check_function |
Source code
|
| check_input_filename |
Man page
Source code
|
| check_input_filename_validity |
Man page
Source code
|
| check_logical |
Source code
|
| check_n_threads |
Man page
Source code
|
| check_name |
Source code
|
| check_number_decimal |
Source code
|
| check_number_whole |
Source code
|
| check_os |
Man page
Source code
|
| check_rng_seed |
Man page
Source code
|
| check_string |
Source code
|
| check_symbol |
Source code
|
| check_true |
Source code
|
| continue_beast2 |
Man page
Source code
|
| create_beast2_continue_cmd_from_options |
Man page
Source code
|
| create_beast2_input_file_folder |
Man page
Source code
|
| create_beast2_options |
Man page
Source code
|
| create_beast2_run_cmd |
Man page
Source code
|
| create_beast2_run_cmd_from_options |
Man page
Source code
|
| create_beast2_screenlog_folder |
Man page
Source code
|
| create_beast2_state_output_file_folder |
Man page
Source code
|
| create_beast2_tracelog_folder |
Man page
Source code
|
| create_beast2_treelog_folder |
Man page
Source code
|
| create_beast2_validate_cmd |
Man page
Source code
|
| create_beast2_validate_cmd_bin |
Man page
Source code
|
| create_beast2_validate_cmd_jar |
Man page
Source code
|
| create_beast2_version_cmd |
Man page
Source code
|
| create_beast2_version_cmd_bin |
Man page
Source code
|
| create_beast2_version_cmd_jar |
Man page
Source code
|
| create_beastier_tempfolder |
Man page
Source code
|
| create_mcbette_beast2_options |
Man page
Source code
|
| create_random_alignment |
Man page
Source code
|
| create_random_fasta |
Man page
Source code
|
| create_random_phylogeny |
Man page
Source code
|
| create_temp_input_filename |
Man page
Source code
|
| create_temp_state_filename |
Man page
Source code
|
| default_params_doc |
Man page
Source code
|
| do_minimal_run |
Man page
Source code
|
| extract_screenlog_filename_from_beast2_input_file |
Man page
Source code
|
| extract_tracelog_filename_from_beast2_input_file |
Man page
Source code
|
| extract_treelog_filename_from_beast2_input_file |
Man page
Source code
|
| get_alignment_ids_from_xml_filename |
Man page
Source code
|
| get_beast2_example_filename |
Man page
Source code
|
| get_beast2_example_filenames |
Man page
Source code
|
| get_beast2_main_class_name |
Man page
Source code
|
| get_beast2_options_filenames |
Man page
Source code
|
| get_beast2_version |
Man page
Source code
|
| get_beastier_folder |
Man page
Source code
|
| get_beastier_path |
Man page
Source code
|
| get_beastier_paths |
Man page
Source code
|
| get_beastier_tempfilename |
Man page
Source code
|
| get_default_beast2_bin_path |
Man page
Source code
|
| get_default_beast2_download_url |
Man page
Source code
|
| get_default_beast2_download_url_linux |
Man page
Source code
|
| get_default_beast2_download_url_win |
Man page
Source code
|
| get_default_beast2_folder |
Man page
Source code
|
| get_default_beast2_jar_path |
Man page
Source code
|
| get_default_beast2_path |
Man page
Source code
|
| get_default_beast2_version |
Man page
Source code
|
| get_default_java_path |
Man page
Source code
|
| get_duplicate_param_ids |
Man page
Source code
|
| get_java_version |
Man page
Source code
|
| get_trees_filenames |
Man page
Source code
|
| gives_beast2_warning |
Man page
Source code
|
| has_unique_ids |
Man page
Source code
|
| install_beast2 |
Man page
Source code
|
| is_alignment |
Man page
Source code
|
| is_beast2_input_file |
Man page
Source code
|
| is_beast2_installed |
Man page
Source code
|
| is_bin_path |
Man page
Source code
|
| is_jar_path |
Man page
Source code
|
| is_on_appveyor |
Man page
Source code
|
| is_on_ci |
Man page
Source code
|
| is_on_travis |
Man page
Source code
|
| is_win_bin_path |
Man page
Source code
|
| obj_type_friendly |
Source code
|
| obj_type_oo |
Source code
|
| oxford_comma |
Source code
|
| print_beast2_options |
Man page
Source code
|
| remove_beastier_folder |
Man page
Source code
|
| remove_beaustier_folders |
Man page
Source code
|
| remove_file_if_present |
Man page
Source code
|
| rename_beast2_options_filenames |
Man page
Source code
|
| run_beast2 |
Man page
Source code
|
| run_beast2_from_options |
Man page
Source code
|
| save_lines |
Man page
Source code
|
| save_nexus_as_fasta |
Man page
Source code
|
| stop_input_type |
Source code
|
| uninstall_beast2 |
Man page
Source code
|
| upgrade_beast2 |
Man page
Source code
|
| vec_type_friendly |
Source code
|
