isothermal_OED: Optimal Experiment Design of isothermal inactivation

In bioOED: Sensitivity Analysis and Optimum Experiment Design for Microbial Inactivation

Description

Calculates an Optimal Experiment for an isothermal microbial inactivation experiment considering the maximum duration of the experiment according to the detection limit.

Usage

isothermal_OED(model, pars, n_points, min_time, max_time, min_temp,
  max_temp, criterion = "D", opts = NULL)

Arguments

model	character string defining the inactivation model to use.
pars	list defining the nominal model parameters.
n_points	numerical stating the number of data points.
min_time	numerical stating the lower limit for the time points.
max_time	numerical stating the upper limit for the time points.
min_temp	numerical stating the lower limit for the temperature.
max_temp	numerical stating the upper limit for the temperature.
criterion	character stating the criterion to use for the OED. function evaluations with local finish with the DHC algorithm (see help from MEIGO).
opts	options for the MEIGO algorithm. By default, a maximum of 2000

Value

A MEIGO object

Examples

pars <- list(z = 4.2, D_R = 3.9, temp_ref = 55)
opts <- list(maxeval=200,local_finish="DHC")
## Not run: 
OED <- isothermal_OED("Bigelow", pars, n_points = 5, criterion = "E-mod", 
                      min_time = 0, max_time = 100, min_temp = 52.5, max_temp = 60, 
                      opts = opts)
plot(OED)

## End(Not run)

bioOED documentation built on Aug. 7, 2019, 5:03 p.m.