span: Get the span of genomic features.

In biofiles: An Interface for GenBank/GenPept Flat Files

Description

Get the span of genomic features.

Usage

span(x, ...)

joint_range(x)

## S4 method for signature 'gbLocation'
span(x, join = FALSE)

## S4 method for signature 'gbLocation'
joint_range(x)

## S4 method for signature 'gbFeature'
span(x, join = FALSE)

## S4 method for signature 'gbFeature'
joint_range(x)

## S4 method for signature 'gbFeatureTable'
span(x, join = FALSE)

## S4 method for signature 'gbFeatureTable'
joint_range(x)

## S4 method for signature 'gbRecord'
span(x, join = FALSE)

## S4 method for signature 'gbRecordList'
span(x, join = FALSE)

Arguments

x	A gbFeature, gbFeatureTable, gbRecord, or gbRecordList object.
...	Further arguments passed to methods.
join	Join compound genomic locations into a single range.

Value

An integer vector or a list of integer vectors.

See Also

start, end, strand, ranges

Examples

load(system.file("extdata", "marine_metagenome.rda", package = "biofiles"))
span(x)

biofiles documentation built on May 2, 2019, 3:31 p.m.