strand: Get or set the strand information of genomic features

In biofiles: An Interface for GenBank/GenPept Flat Files

Description

Get or set the strand information of genomic features

Usage

strand(x, ...)

strand(x, ...) <- value

## S4 method for signature 'gbLocation'
strand(x, join = FALSE)

## S4 replacement method for signature 'gbLocation'
strand(x, ...) <- value

## S4 method for signature 'gbFeature'
strand(x, join = FALSE)

## S4 replacement method for signature 'gbFeature'
strand(x, ...) <- value

## S4 method for signature 'gbFeatureTable'
strand(x, join = FALSE)

## S4 replacement method for signature 'gbFeatureTable'
strand(x, ...) <- value

## S4 method for signature 'gbRecord'
strand(x, join = FALSE)

## S4 method for signature 'gbRecordList'
strand(x, join = FALSE)

Arguments

x	A gbFeature, gbFeatureTable, gbRecord, or gbRecordList object.
...	Further arguments passed to methods.
value	The strand information to set on x.
join	Join compound genomic locations into a single range.

Value

An integer vector (or a list thereof) of 1 (plus strand), -1 (minus strand), or NA

See Also

start, end, span, ranges

Examples

load(system.file("extdata", "marine_metagenome.rda", package = "biofiles"))

## strand
strand(x)

## `strand<-`
showMethods("strand<-")

biofiles documentation built on May 2, 2019, 3:31 p.m.