Nothing
## ----include=FALSE, cache=FALSE------------------------------------------
library(knitr)
#opts_chunk$set(cache=FALSE,tidy=FALSE,highlight=FALSE)
opts_chunk$set(cache = FALSE, tidy = FALSE, fig.align = "center")
library(biogas)
options(width=75)
## ------------------------------------------------------------------------
library(biogas)
data("vol")
dim(vol)
head(vol)
summary(vol)
## ------------------------------------------------------------------------
data("comp")
dim(comp)
head(comp)
summary(comp)
## ------------------------------------------------------------------------
data("setup")
setup
## ----cumBgargs-----------------------------------------------------------
args(cumBg)
## ------------------------------------------------------------------------
cum.prod <- cumBg(vol, comp = comp, time.name = "days", temp = 35, pres = 1,
extrap = TRUE)
## ------------------------------------------------------------------------
head(cum.prod)
dim(cum.prod)
## ----fig.width=6, fig.height=4, fig.align="center"-----------------------
library(ggplot2)
qplot(x = days, y = cvCH4, data = cum.prod, xlab = "Time (d)",
ylab = "Cumulative methane production (mL)", color = id,
geom = "line")
## ----<-------------------------------------------------------------------
data("s3voll")
data("s3compl")
data("s3volw")
data("s3compw")
data("s3lcombo")
## ------------------------------------------------------------------------
s3voll
s3compl
## ------------------------------------------------------------------------
s3volw
s3compw
## ------------------------------------------------------------------------
s3lcombo
## ------------------------------------------------------------------------
cpl <- cumBg(s3lcombo, comp = s3compl, temp = 25, pres = 1,
id.name = 'id', time.name = 'time.d',
dat.name = 'vol.ml', comp.name = 'xCH4',
extrap = TRUE)
cpw <- cumBg(s3volw, comp = s3compw, temp = 25, pres = 1,
time.name = 'time.d',
data.struct = 'wide',
dat.name = 'D', comp.name = 'D',
extrap = TRUE)
cpc <- cumBg(s3lcombo, temp = 25, pres = 1,
id.name = 'id', time.name = 'time.d',
data.struct = 'longcombo',
dat.name = 'vol.ml', comp.name = 'xCH4',
extrap = TRUE)
## ------------------------------------------------------------------------
head(cpl)
head(cpw)
head(cpc)
## ----summBgargs----------------------------------------------------------
args(summBg)
## ----cprod30-------------------------------------------------------------
summBg(cum.prod, setup = setup, time.name = "days", descrip.name = "descrip",
when = 30)
## ------------------------------------------------------------------------
BMP <- summBg(cum.prod, setup = setup, time.name = "days", inoc.name = "inoc",
inoc.m.name = "minoc", norm.name = "mvs.sub", when = "1p3d")
BMP
## ------------------------------------------------------------------------
predBg("C6H10O5")
## ----cellbmpcomp---------------------------------------------------------
BMP
## ------------------------------------------------------------------------
predBg("C6H10O5", fs = 0.1)
## ------------------------------------------------------------------------
predBg(COD = c(A = 1.439, B = 1.561, cellu = 1.184))
## ------------------------------------------------------------------------
BMP$mean/predBg(COD = c(A = 1.439, B = 1.561, cellu = 1.184))
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