PAC: Potential for Apparent Competition
In bipartite: Visualising Bipartite Networks and Calculating Some (Ecological) Indices
PAC R Documentation
Potential for Apparent Competition
Description
Quantifies, for each pair of lower trophic level species, the potential for showing apparent competition with another species, mediated through the higher trophic level.
Usage
PAC(web)
Arguments
web
A host-parasitoid network (or alike), where the entries represent the sum of parasitoids emerging from the interactions between parasitoid and host (i.e. number of interactions * number of parasitoid individuals emerging from each host). Only if there is only one parasitoid per host this web will be the same as that used in all other calculations in this package!
Details
Calculates the potential for apparent competition (Holt 1977), following the formula given in Müller et al. (1999) and Morris et al. (2005). See also Morris et al. (2004) for an experimental test.
Value
Returns a k x k matrix with entries d.ij, where k is the number of species in the lower trophic level and i and j are lower trophic level species. The matrix represents the effect of column species on row species. Diagonal entries are “apparent intraspecific competition”.
Note
The idea is that in host-parasitoid networks one host also affects other hosts by the number of parasitoid that hatch from it and are thus added to the pool of parasitoids. An abundant, large host can (involuntarily) contribute many parasitoids to the pool, thus also increasing the parasitoid burden of other hosts. This looks like competition between the two hosts, while in fact it is mediated through the other trophic level.
Whether this concept can be usefully applied to mutualist networks (such as flower visitation networks, aka pollination webs) is still under-investigated. The study of Carvalheiro et al. (2014) provide an example for constructive use in mutualistic networks.
Author(s)
Carsten F. Dormann carsten.dormann@biom.uni-freiburg.de
References
Carvalheiro, L.G., Biesmeijer, J.C., Benadi, G., Fründ, J., Stang, M., Bartomeus, I., Kaiser-Bunbury, C.N., Baude, M., Gomes, S.I.F., Merckx, V., Baldock, K.C.R., Bennett, A.T.D., Boada, R., Bommarco, R., Cartar, R., Chacoff, N., Dänhardt, J., Dicks, L. V., Dormann, C.F., Ekroos, J., Henson, K.S.E., Holzschuh, A., Junker, R.R., Lopezaraiza-Mikel, M., Memmott, J., Montero-Castaño, A., Nelson, I.L., Petanidou, T., Power, E.F., Rundlöf, M., Smith, H.G., Stout, J.C., Temitope, K., Tscharntke, T., Tscheulin, T., Vilà, M. & Kunin, W.E. 2014 The potential for indirect effects between co-flowering plants via shared pollinators depends on resource abundance, accessibility and relatedness. Ecology Letters 17, 1389–1399.
Holt, R. D. 1977 Predation, apparent competition and the structure of prey communities. Theoretical Population Biology 12, 197–229.
Morris, R. J., Lewis, O. T. and Godfray, H. C. J. 2004 Experimental evidence for apparent competition in a tropical forest food web. Nature 428, 310–313.
Morris, R. J., Lewis, O. T. and Godfray, H. C. J. 2005 Apparent competition and insect community structure: towards a spatial perspective. Annales Zoologica Fennici 42, 449–462.
Müller, C. B., Adriaanse, I. C. T., Belshaw, R. and Godfray, H. C. J. 1999 The structure of an aphid-parasitoid community. Journal of Animal Ecology 68, 346–370
Examples
data(Safariland)
PAC(Safariland)
bipartite documentation built on May 29, 2024, 2:23 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| PAC | R Documentation |
Potential for Apparent Competition
Description
Quantifies, for each pair of lower trophic level species, the potential for showing apparent competition with another species, mediated through the higher trophic level.
Usage
PAC(web)
Arguments
web |
A host-parasitoid network (or alike), where the entries represent the sum of parasitoids emerging from the interactions between parasitoid and host (i.e. number of interactions * number of parasitoid individuals emerging from each host). Only if there is only one parasitoid per host this web will be the same as that used in all other calculations in this package! |
Details
Calculates the potential for apparent competition (Holt 1977), following the formula given in Müller et al. (1999) and Morris et al. (2005). See also Morris et al. (2004) for an experimental test.
Value
Returns a k x k matrix with entries d.ij, where k is the number of species in the lower trophic level and i and j are lower trophic level species. The matrix represents the effect of column species on row species. Diagonal entries are “apparent intraspecific competition”.
Note
The idea is that in host-parasitoid networks one host also affects other hosts by the number of parasitoid that hatch from it and are thus added to the pool of parasitoids. An abundant, large host can (involuntarily) contribute many parasitoids to the pool, thus also increasing the parasitoid burden of other hosts. This looks like competition between the two hosts, while in fact it is mediated through the other trophic level.
Whether this concept can be usefully applied to mutualist networks (such as flower visitation networks, aka pollination webs) is still under-investigated. The study of Carvalheiro et al. (2014) provide an example for constructive use in mutualistic networks.
Author(s)
Carsten F. Dormann carsten.dormann@biom.uni-freiburg.de
References
Carvalheiro, L.G., Biesmeijer, J.C., Benadi, G., Fründ, J., Stang, M., Bartomeus, I., Kaiser-Bunbury, C.N., Baude, M., Gomes, S.I.F., Merckx, V., Baldock, K.C.R., Bennett, A.T.D., Boada, R., Bommarco, R., Cartar, R., Chacoff, N., Dänhardt, J., Dicks, L. V., Dormann, C.F., Ekroos, J., Henson, K.S.E., Holzschuh, A., Junker, R.R., Lopezaraiza-Mikel, M., Memmott, J., Montero-Castaño, A., Nelson, I.L., Petanidou, T., Power, E.F., Rundlöf, M., Smith, H.G., Stout, J.C., Temitope, K., Tscharntke, T., Tscheulin, T., Vilà, M. & Kunin, W.E. 2014 The potential for indirect effects between co-flowering plants via shared pollinators depends on resource abundance, accessibility and relatedness. Ecology Letters 17, 1389–1399.
Holt, R. D. 1977 Predation, apparent competition and the structure of prey communities. Theoretical Population Biology 12, 197–229.
Morris, R. J., Lewis, O. T. and Godfray, H. C. J. 2004 Experimental evidence for apparent competition in a tropical forest food web. Nature 428, 310–313.
Morris, R. J., Lewis, O. T. and Godfray, H. C. J. 2005 Apparent competition and insect community structure: towards a spatial perspective. Annales Zoologica Fennici 42, 449–462.
Müller, C. B., Adriaanse, I. C. T., Belshaw, R. and Godfray, H. C. J. 1999 The structure of an aphid-parasitoid community. Journal of Animal Ecology 68, 346–370
Examples
data(Safariland)
PAC(Safariland)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.