| array2linkmx | Reshape a webarray to a web X link matrix |
| as.one.mode | Conversion of a network matrix |
| as.tnet | Ensures that networks conform to the tnet stardards |
| barrett1987 | Individuals caught in a pollination web in boreal Canada. |
| betalinkr | Calculate network dissimilarity (beta diversity) and its... |
| betweenness_w | Betweenness centrality in a weighted network |
| bezerra2009 | Individuals observed in a flower-visitation network of... |
| bipartite-package | Analysis of bipartite ecological webs |
| closeness_w | Closeness centrality in a weighted network |
| clustering_tm | Redefined clustering coefficient for two-mode networks |
| compart | Detects compartments |
| computeModules | computeModules |
| C.score | Calculates the (normalised) mean number of checkerboard... |
| czvalues | Computes c and z for network modules |
| decimalr2dtable | Generates matrix with same marginal totals for non-negative... |
| degreedistr | Fits functions to cumulative degree distributions of both... |
| dfun | Calculates standardised specialisation index d' (d prime) for... |
| discrepancy | Calculates discrepancy of a matrix |
| distance_w | Distance in a weighted network |
| elberling1999 | No. of visits in a pollination web of arctic-alpine Sweden |
| empty | Deletes empty rows and columns from a matrix. |
| endpoint | Computes end-point degrees for a bipartite network |
| extinction | Simulates extinction of a species from a bipartite network |
| fc | Calculates the functional complementarity for the rows of a... |
| frame2webs | Converts a table of observations into a network matrix |
| genweb | Generate a random bipartite web |
| grouplevel | Analysis of bipartite webs at the level of each of the two... |
| H2fun | Specialisation of a bipartite web. |
| inouye1988 | A pollination network from the Snowy Mountains of New South... |
| junker2013 | Flower visitation network |
| kato1990 | No. of individuals caught in a pollination web of a Japanese... |
| kevan1970 | A pollination network from Northern Ellesmere Island, Canada |
| linklevel | Indices of a bipartite network at the link level |
| listModuleInformation | listModuleInformation |
| memmott1999 | Flower visitation network from a meadow near Bristol, UK |
| mgen | Generate simulated network according to a given probability... |
| modulesLPA | Functions "LPA_wb_plus" and "DIRT_LPA_wb_plus" |
| moduleWeb-class | Class "moduleWeb" |
| mosquin1967 | Flower visitation network from Melville Island, Northwest... |
| motten1982 | A spring flower visitation network from North Carolina, USA |
| ND | Normalised degree, betweenness and closeness centrality |
| nested | Calculates any of several measures of nestedness |
| nestedcontribution | Calculates the per-species contribution to nestedness... |
| nestedness | Calculates nestedness temperature of presence/absence... |
| nestedrank | Calculates the rank of a species in a matrix sorted for... |
| nest.smdm | Computes nestedness of a matrix as WNODA (and NODF and WNODF) |
| networklevel | Analysis of bipartite webs at the level of the entire network |
| nodespec | Calculates the node-based specialisation index |
| NOS | Calculates the node overlap and separation according to... |
| npartite | Computes indices for a masked-one-mode network |
| null.distr | Null model based on fitted marginal distribution |
| nullmodel | Generates null models for network analysis |
| null.t.test | Compares observed pattern to random webs. |
| olesen2002aigrettes | A flower visitation network from the Azores |
| olesen2002flores | Another flower visitation network from the Azores |
| olito2015 | A pollination network from the Canadian Rockies |
| ollerton2003 | ollerton2003 |
| PAC | Potential for Apparent Competition |
| PDI | Paired Differences Index |
| plotmatrix | Plot a matrix organised by topology |
| plotModuleWeb | plotModuleWeb |
| plotPAC | Function to draw a circular plot to visualise potential... |
| plotweb | Visualize a bipartite interaction matrix (e.g. a foodweb) |
| plotweb2 | Visualize a tripartite interaction matrix (e.g. a tritrophic... |
| printoutModuleInformation | printoutModuleInformation |
| projecting_tm | Projecting binary and weighted two-mode networks onto... |
| r2dexternal | Generates null models for network analysis by considering... |
| restrictednull | The restricted null model accounting for modules with nested... |
| robustness | Robustness to species extinctions |
| Safariland | A pollination web from Argentina |
| schemske1978 | A flower visitation network from Urbana, IL, USA |
| second.extinct | Secondary extinctions in bipartite networks |
| shuffle.web | Shuffle web entries |
| slope.bipartite | Slope of extinction simulation |
| small1976 | A flower visitation network from a peat bog in Ottawa, Canada |
| sortmatrix | Organise matrix by topology |
| sortweb | Function to sort bipartite webs |
| specieslevel | Calculate various indices for network properties at the... |
| strength | Computes species strength according to either of two... |
| swap.web | Creates null model for bipartite networks |
| symmetrise_w | Symmetrise_w |
| tnet_igraph | Exports a tnet network to an igraph object |
| togetherness | Calculates the number of identical co-presences and... |
| vazarr | A pollination network. |
| vazcer | A pollination network. |
| vazllao | A pollination network. |
| vazmasc | A pollination network. |
| vazmasnc | A pollination network. |
| vaznull | Null model with constrained connectance and moderately... |
| vazquec | A pollination network. |
| vazquenc | A pollination network. |
| vazquez.example | Examples for some analyses |
| versionlog | Log of bipartite versions and changes |
| visweb | Plotting function to visualize a bipartite food web |
| V.ratio | Calculates the variance-ratio as suggested by Schluter (1984) |
| web2edges | Conversion of a network matrix into a (weighted) edge list |
| webs2array | Puts two or more webs into one array of webs |
| wine | Weighted-Interaction Nestedness Estimator |
