plotModuleWeb: plotModuleWeb

In bipartite: Visualising Bipartite Networks and Calculating Some (Ecological) Indices

plotModuleWeb

Description

This function takes an object of class moduleWeb and plots the modules found by function computeModules(...) onto the graph.

Usage

plotModuleWeb(moduleWebObject, plotModules = TRUE, 
rank = FALSE, weighted = TRUE, displayAlabels = TRUE, 
displayBlabels = TRUE, labsize = 1, xlabel = "", ylabel = "", 
square.border = "white", fromDepth = 0, upToDepth = -1)

Arguments

moduleWebObject	An object of class "moduleWeb".
plotModules	If plotModules is true, modules are plotted onto the graph, otherwise only the graph itself is plotted.
rank	logical; if true, rows will be standardised for plotting, yielding a range from light to dark blue for each row; if false, values are ranged across the entire matrix. The latter is more faithful to the data, while the former makes lower levels more comparable, irrespective of marginal totals.
weighted	If weighted is true, the intensity of squares representing the edges corresponds with the edge weight, otherwise all squares representing existing edges have equal intensity.
displayAlabels	Row labels are plotted, iff displayAlabels is true.
displayBlabels	Column labels are plotted, iff displayBlabels is true.
labsize	labsize is the scalar factor with which the size of the plot labels can be changed.
xlabel	xlabel is the label for the x-axis.
ylabel	ylabel is the label for the y-axis.
square.border	Background color of area with squares.
fromDepth	Minimal depth of modules which should be plotted.
upToDepth	Maximal depth of modules which should be plotted. If upToDepth is smaller then fromDepth, all modules are plotted.

Value

A plot window with appropriate size according to the dimensions of the web.

Author(s)

Rouven Strauss

See Also

See also function visweb.

Examples

## Not run: 
data(small1976)

moduleWebObject = computeModules(small1976);
plotModuleWeb(moduleWebObject);

## End(Not run)

bipartite documentation built on May 29, 2024, 2:23 a.m.