blockcluster: Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets

Simultaneous clustering of rows and columns, usually designated by biclustering, co-clustering or block clustering, is an important technique in two way data analysis. It consists of estimating a mixture model which takes into account the block clustering problem on both the individual and variables sets. The blockcluster package provides a bridge between the C++ core library and the R statistical computing environment. This package allows to co-cluster binary, contingency, continuous and categorical data-sets. It also provides utility functions to visualize the results. This package may be useful for various applications in fields of Data mining, Information retrieval, Biology, computer vision and many more. More information about the project and comprehensive tutorial can be found on the link mentioned in URL.

AuthorSerge Iovleff [aut, cre], Parmeet Singh Bhatia [aut], Josselin Demont [ctb], Gerard Goavert [ctb], Vincent Brault [ctb], Christophe Biernacki [ctb], Gilles Celeux [ctb]
Date of publication2017-02-27 21:39:25
MaintainerSerge Iovleff <Serge.Iovleff@stkpp.org>
LicenseGPL (>= 3)
Version4.2.3
https://gforge.inria.fr/projects/cocluster/

View on CRAN

Functions

[ Man page
binarydata Man page
BinaryOptions-class Man page
[,BinaryOptions-method Man page
blockcluster Man page
categoricaldata Man page
CategoricalOptions-class Man page
[,CategoricalOptions-method Man page
cocluster Man page
coclusterBinary Man page
coclusterCategorical Man page
coclusterContingency Man page
coclusterContinuous Man page
coclusterStrategy Man page
CommonOptions-class Man page
contingencydatalist Man page
contingencydataunknown Man page
ContingencyOptions-class Man page
[,ContingencyOptions-method Man page
ContinuousOptions-class Man page
[,ContinuousOptions-method Man page
gaussiandata Man page
plot Man page
plot,BinaryOptions-method Man page
plot,CategoricalOptions-method Man page
plot,ContingencyOptions-method Man page
plot,ContinuousOptions-method Man page
strategy-class Man page
[,strategy-method Man page
summary Man page
summary,BinaryOptions-method Man page
summary,CategoricalOptions-method Man page
summary,ContingencyOptions-method Man page
summary,ContinuousOptions-method Man page
summary,strategy-method Man page
XEMStrategy Man page

Files

blockcluster
blockcluster/inst
blockcluster/inst/CITATION
blockcluster/inst/doc
blockcluster/inst/doc/blockcluster_tutorial.Rnw
blockcluster/inst/doc/blockcluster_tutorial.pdf
blockcluster/inst/doc/blockcluster_tutorial.R
blockcluster/tests
blockcluster/tests/Contingency
blockcluster/tests/Contingency/contingency.R
blockcluster/tests/Categorical
blockcluster/tests/Categorical/categorical.R
blockcluster/tests/Continuous
blockcluster/tests/Continuous/continuous.R
blockcluster/tests/maketest.sh
blockcluster/tests/Binary
blockcluster/tests/Binary/binary.R
blockcluster/src
blockcluster/src/IDataExchange.h
blockcluster/src/Makevars
blockcluster/src/conversion.h
blockcluster/src/coclust
blockcluster/src/coclust/get_symbolic_link_without_trunk.sh
blockcluster/src/coclust/src
blockcluster/src/coclust/src/typedefs
blockcluster/src/coclust/src/typedefs/typedef.h
blockcluster/src/coclust/src/Algorithms
blockcluster/src/coclust/src/Algorithms/SEMAlgo.h
blockcluster/src/coclust/src/Algorithms/CEMAlgo.cpp
blockcluster/src/coclust/src/Algorithms/GibbsAlgo.cpp
blockcluster/src/coclust/src/Algorithms/IAlgo.h
blockcluster/src/coclust/src/Algorithms/EMAlgo.cpp
blockcluster/src/coclust/src/Algorithms/SEMAlgo.cpp
blockcluster/src/coclust/src/Algorithms/EMAlgo.h
blockcluster/src/coclust/src/Algorithms/GibbsAlgo.h
blockcluster/src/coclust/src/Algorithms/CEMAlgo.h
blockcluster/src/coclust/src/CoClustFacade
blockcluster/src/coclust/src/CoClustFacade/CoCluster.cpp
blockcluster/src/coclust/src/CoClustFacade/CoCluster.h
blockcluster/src/coclust/src/enumerations
blockcluster/src/coclust/src/enumerations/enumerations.h
blockcluster/src/coclust/src/Strategy
blockcluster/src/coclust/src/Strategy/XStrategyforSEMAlgo.h
blockcluster/src/coclust/src/Strategy/XStrategyforSEMAlgo.cpp
blockcluster/src/coclust/src/Strategy/XStrategyAlgo.cpp
blockcluster/src/coclust/src/Strategy/XStrategyAlgo.h
blockcluster/src/coclust/src/Strategy/IStrategy.h
blockcluster/src/coclust/src/Initialization
blockcluster/src/coclust/src/Initialization/CEMInit.h
blockcluster/src/coclust/src/Initialization/RandomInit.h
blockcluster/src/coclust/src/Initialization/EMInit.h
blockcluster/src/coclust/src/Initialization/IInit.h
blockcluster/src/coclust/src/InputParameters
blockcluster/src/coclust/src/InputParameters/InputParameters.h
blockcluster/src/coclust/src/InputParameters/InputParameters.cpp
blockcluster/src/coclust/src/Models
blockcluster/src/coclust/src/Models/ContingencyLBModel_mu_i_nu_j.h
blockcluster/src/coclust/src/Models/BinaryLBModel.cpp
blockcluster/src/coclust/src/Models/ContingencyLBModel_mu_i_nu_j.cpp
blockcluster/src/coclust/src/Models/ContinuousLBModelequalsigma.cpp
blockcluster/src/coclust/src/Models/BinaryLBModelequalepsilon.cpp
blockcluster/src/coclust/src/Models/ContingencyLBModel.h
blockcluster/src/coclust/src/Models/ContinuousLBModel.cpp
blockcluster/src/coclust/src/Models/ICoClustModel.cpp
blockcluster/src/coclust/src/Models/BinaryLBModel.h
blockcluster/src/coclust/src/Models/BinaryLBModelequalepsilon.h
blockcluster/src/coclust/src/Models/CategoricalLBModel.cpp
blockcluster/src/coclust/src/Models/ICoClustModel.h
blockcluster/src/coclust/src/Models/ContinuousLBModel.h
blockcluster/src/coclust/src/Models/ContingencyLBModel.cpp
blockcluster/src/coclust/src/Models/ContinuousLBModelequalsigma.h
blockcluster/src/coclust/src/Models/CategoricalLBModel.h
blockcluster/src/coclust/makefile
blockcluster/src/coclust/get_symbolic_link.sh
blockcluster/src/CategoricalDataExchange.cpp
blockcluster/src/ContingencyDataExchange.cpp
blockcluster/src/init_blockcluster.c
blockcluster/src/IDataExchange.cpp
blockcluster/src/BinaryDataExchange.cpp
blockcluster/src/Rcoclustmain.cpp
blockcluster/src/ContinuousDataExchange.cpp
blockcluster/src/CategoricalDataExchange.h
blockcluster/src/test
blockcluster/src/test/test.cpp
blockcluster/src/BinaryDataExchange.h
blockcluster/src/Rcoclustmain.h
blockcluster/src/Makevars.win
blockcluster/src/ContinuousDataExchange.h
blockcluster/src/ContingencyDataExchange.h
blockcluster/NAMESPACE
blockcluster/data
blockcluster/data/contingencydatalist.rda
blockcluster/data/contingencydataunknown.rda
blockcluster/data/categoricaldata.rda
blockcluster/data/gaussiandata.rda
blockcluster/data/binarydata.rda
blockcluster/R
blockcluster/R/optionclasses.R blockcluster/R/coclusterCategorical.R blockcluster/R/coclusterBinary.R blockcluster/R/cocluster.R blockcluster/R/coclusterStrategy.R blockcluster/R/RCocluster.R blockcluster/R/onattach.R blockcluster/R/coclusterContingency.R blockcluster/R/coclusterContinuous.R
blockcluster/vignettes
blockcluster/vignettes/blockcluster_tutorial.Rnw
blockcluster/vignettes/figs
blockcluster/vignettes/figs/distributionbinary.jpeg
blockcluster/vignettes/figs/orgdata.jpg
blockcluster/vignettes/figs/coclustersnake.jpg
blockcluster/vignettes/figs/coclustdata.jpg
blockcluster/vignettes/figs/binarysamplecocluster.png
blockcluster/vignettes/figs/coclustbinary1.jpg
blockcluster/vignettes/biblio.bib
blockcluster/MD5
blockcluster/build
blockcluster/build/vignette.rds
blockcluster/DESCRIPTION
blockcluster/man
blockcluster/man/summary-methods.Rd blockcluster/man/ContingencyOptions-class.Rd blockcluster/man/plot-methods.Rd blockcluster/man/BinaryOptions-class.Rd blockcluster/man/contingencydatalist.Rd blockcluster/man/gaussiandata.Rd blockcluster/man/CommonOptions-class.Rd blockcluster/man/blockcluster.Rd blockcluster/man/coclusterCategorical.Rd blockcluster/man/coclusterStrategy.Rd blockcluster/man/coclusterContingency.Rd blockcluster/man/CategoricalOptions-class.Rd blockcluster/man/binarydata.Rd blockcluster/man/XEMStrategy.Rd blockcluster/man/categoricaldata.Rd blockcluster/man/cocluster.Rd blockcluster/man/contingencydataunknown.Rd blockcluster/man/getter-methods.Rd blockcluster/man/coclusterContinuous.Rd blockcluster/man/ContinuousOptions-class.Rd blockcluster/man/coclusterBinary.Rd
blockcluster/cleanup

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