blockcluster: Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets

Simultaneous clustering of rows and columns, usually designated by biclustering, co-clustering or block clustering, is an important technique in two way data analysis. It consists of estimating a mixture model which takes into account the block clustering problem on both the individual and variables sets. The blockcluster package provides a bridge between the C++ core library and the R statistical computing environment. This package allows to co-cluster binary, contingency, continuous and categorical data-sets. It also provides utility functions to visualize the results. This package may be useful for various applications in fields of Data mining, Information retrieval, Biology, computer vision and many more. More information about the project and comprehensive tutorial can be found on the link mentioned in URL.

Install the latest version of this package by entering the following in R:
install.packages("blockcluster")
AuthorSerge Iovleff [aut, cre], Parmeet Singh Bhatia [aut], Josselin Demont [ctb], Gerard Goavert [ctb], Vincent Brault [ctb], Christophe Biernacki [ctb], Gilles Celeux [ctb]
Date of publication2017-02-27 21:39:25
MaintainerSerge Iovleff <Serge.Iovleff@stkpp.org>
LicenseGPL (>= 3)
Version4.2.3
https://gforge.inria.fr/projects/cocluster/

View on CRAN

Functions

[ Man page
binarydata Man page
BinaryOptions-class Man page
[,BinaryOptions-method Man page
blockcluster Man page
categoricaldata Man page
CategoricalOptions-class Man page
[,CategoricalOptions-method Man page
cocluster Man page
coclusterBinary Man page
coclusterCategorical Man page
coclusterContingency Man page
coclusterContinuous Man page
coclusterStrategy Man page
CommonOptions-class Man page
contingencydatalist Man page
contingencydataunknown Man page
ContingencyOptions-class Man page
[,ContingencyOptions-method Man page
ContinuousOptions-class Man page
[,ContinuousOptions-method Man page
gaussiandata Man page
plot Man page
plot,BinaryOptions-method Man page
plot,CategoricalOptions-method Man page
plot,ContingencyOptions-method Man page
plot,ContinuousOptions-method Man page
strategy-class Man page
[,strategy-method Man page
summary Man page
summary,BinaryOptions-method Man page
summary,CategoricalOptions-method Man page
summary,ContingencyOptions-method Man page
summary,ContinuousOptions-method Man page
summary,strategy-method Man page
XEMStrategy Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/blockcluster_tutorial.Rnw
inst/doc/blockcluster_tutorial.pdf
inst/doc/blockcluster_tutorial.R
tests
tests/Contingency
tests/Contingency/contingency.R
tests/Categorical
tests/Categorical/categorical.R
tests/Continuous
tests/Continuous/continuous.R
tests/maketest.sh
tests/Binary
tests/Binary/binary.R
src
src/IDataExchange.h
src/Makevars
src/conversion.h
src/coclust
src/coclust/get_symbolic_link_without_trunk.sh
src/coclust/src
src/coclust/src/typedefs
src/coclust/src/typedefs/typedef.h
src/coclust/src/Algorithms
src/coclust/src/Algorithms/SEMAlgo.h
src/coclust/src/Algorithms/CEMAlgo.cpp
src/coclust/src/Algorithms/GibbsAlgo.cpp
src/coclust/src/Algorithms/IAlgo.h
src/coclust/src/Algorithms/EMAlgo.cpp
src/coclust/src/Algorithms/SEMAlgo.cpp
src/coclust/src/Algorithms/EMAlgo.h
src/coclust/src/Algorithms/GibbsAlgo.h
src/coclust/src/Algorithms/CEMAlgo.h
src/coclust/src/CoClustFacade
src/coclust/src/CoClustFacade/CoCluster.cpp
src/coclust/src/CoClustFacade/CoCluster.h
src/coclust/src/enumerations
src/coclust/src/enumerations/enumerations.h
src/coclust/src/Strategy
src/coclust/src/Strategy/XStrategyforSEMAlgo.h
src/coclust/src/Strategy/XStrategyforSEMAlgo.cpp
src/coclust/src/Strategy/XStrategyAlgo.cpp
src/coclust/src/Strategy/XStrategyAlgo.h
src/coclust/src/Strategy/IStrategy.h
src/coclust/src/Initialization
src/coclust/src/Initialization/CEMInit.h
src/coclust/src/Initialization/RandomInit.h
src/coclust/src/Initialization/EMInit.h
src/coclust/src/Initialization/IInit.h
src/coclust/src/InputParameters
src/coclust/src/InputParameters/InputParameters.h
src/coclust/src/InputParameters/InputParameters.cpp
src/coclust/src/Models
src/coclust/src/Models/ContingencyLBModel_mu_i_nu_j.h
src/coclust/src/Models/BinaryLBModel.cpp
src/coclust/src/Models/ContingencyLBModel_mu_i_nu_j.cpp
src/coclust/src/Models/ContinuousLBModelequalsigma.cpp
src/coclust/src/Models/BinaryLBModelequalepsilon.cpp
src/coclust/src/Models/ContingencyLBModel.h
src/coclust/src/Models/ContinuousLBModel.cpp
src/coclust/src/Models/ICoClustModel.cpp
src/coclust/src/Models/BinaryLBModel.h
src/coclust/src/Models/BinaryLBModelequalepsilon.h
src/coclust/src/Models/CategoricalLBModel.cpp
src/coclust/src/Models/ICoClustModel.h
src/coclust/src/Models/ContinuousLBModel.h
src/coclust/src/Models/ContingencyLBModel.cpp
src/coclust/src/Models/ContinuousLBModelequalsigma.h
src/coclust/src/Models/CategoricalLBModel.h
src/coclust/makefile
src/coclust/get_symbolic_link.sh
src/CategoricalDataExchange.cpp
src/ContingencyDataExchange.cpp
src/init_blockcluster.c
src/IDataExchange.cpp
src/BinaryDataExchange.cpp
src/Rcoclustmain.cpp
src/ContinuousDataExchange.cpp
src/CategoricalDataExchange.h
src/test
src/test/test.cpp
src/BinaryDataExchange.h
src/Rcoclustmain.h
src/Makevars.win
src/ContinuousDataExchange.h
src/ContingencyDataExchange.h
NAMESPACE
data
data/contingencydatalist.rda
data/contingencydataunknown.rda
data/categoricaldata.rda
data/gaussiandata.rda
data/binarydata.rda
R
R/optionclasses.R R/coclusterCategorical.R R/coclusterBinary.R R/cocluster.R R/coclusterStrategy.R R/RCocluster.R R/onattach.R R/coclusterContingency.R R/coclusterContinuous.R
vignettes
vignettes/blockcluster_tutorial.Rnw
vignettes/figs
vignettes/figs/distributionbinary.jpeg
vignettes/figs/orgdata.jpg
vignettes/figs/coclustersnake.jpg
vignettes/figs/coclustdata.jpg
vignettes/figs/binarysamplecocluster.png
vignettes/figs/coclustbinary1.jpg
vignettes/biblio.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/summary-methods.Rd man/ContingencyOptions-class.Rd man/plot-methods.Rd man/BinaryOptions-class.Rd man/contingencydatalist.Rd man/gaussiandata.Rd man/CommonOptions-class.Rd man/blockcluster.Rd man/coclusterCategorical.Rd man/coclusterStrategy.Rd man/coclusterContingency.Rd man/CategoricalOptions-class.Rd man/binarydata.Rd man/XEMStrategy.Rd man/categoricaldata.Rd man/cocluster.Rd man/contingencydataunknown.Rd man/getter-methods.Rd man/coclusterContinuous.Rd man/ContinuousOptions-class.Rd man/coclusterBinary.Rd
cleanup

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.