coclusterContinuous: Co-Clustering function.

In blockcluster: Co-Clustering Package for Binary, Categorical, Contingency and Continuous Data-Sets

Co-Clustering function.

Description

This function performs Co-Clustering (simultaneous clustering of rows and columns ) for continuous data-sets using latent block models. It can also be used to perform semi-supervised co-clustering.

Usage

coclusterContinuous(
  data,
  semisupervised = FALSE,
  rowlabels = integer(0),
  collabels = integer(0),
  model = NULL,
  nbcocluster,
  strategy = coclusterStrategy(),
  nbCore = 1
)

Arguments

data	Input data as matrix (or list containing data matrix.)
semisupervised	Boolean value specifying whether to perform semi-supervised co-clustering or not. Make sure to provide row and/or column labels if specified value is true. The default value is false.
rowlabels	Vector specifying the class of rows. The class number starts from zero. Provide -1 for unknown row class.
collabels	Vector specifying the class of columns. The class number starts from zero. Provide -1 for unknown column class.
model	This is the name of model. The following models exists for Gaussian data: Model Data-type Proportions Dispersion/Variance pik_rhol_sigma2kl(Default) continuous unequal unequal pik_rhol_sigma2 continuous unequal equal pi_rho_sigma2kl continuous equal unequal pi_rho_sigma2 continuous equal equal
nbcocluster	Integer vector specifying the number of row and column clusters respectively.
strategy	Object of class strategy.
nbCore	number of thread to use (OpenMP must be available), 0 for all cores. Default value is 1.

Value

Return an object of BinaryOptions or ContingencyOptions or ContinuousOptions depending on whether the data-type is Binary, Contingency or Continuous respectively.

Examples

# Simple example with simulated continuous data
#load data
data(gaussiandata)
#usage of coclusterContinuous function in its most simplest form
out<-coclusterContinuous(gaussiandata,nbcocluster=c(2,3))
#Summarize the output results
summary(out)
#Plot the original and Co-clustered data 
plot(out)

blockcluster documentation built on March 7, 2023, 6:39 p.m.