View source: R/coclusterBinary.R
coclusterBinary | R Documentation |
This function performs Co-Clustering (simultaneous clustering of rows and columns ) for Binary data-sets using latent block models. It can also be used to perform semi-supervised co-clustering.
coclusterBinary( data, semisupervised = FALSE, rowlabels = integer(0), collabels = integer(0), model = NULL, nbcocluster, strategy = coclusterStrategy(), a = 1, b = 1, nbCore = 1 )
data |
Input data as matrix (or list containing data matrix) | |||||||||||||||||||||
semisupervised |
Boolean value specifying whether to perform semi-supervised co-clustering or not. Make sure to provide row and/or column labels if specified value is true. The default value is false. | |||||||||||||||||||||
rowlabels |
Integer Vector specifying the class of rows. The class number starts from zero. Provide -1 for unknown row class. | |||||||||||||||||||||
collabels |
Integer Vector specifying the class of columns. The class number starts from zero. Provide -1 for unknown column class. | |||||||||||||||||||||
model |
This is the name of model. The following models exists for Binary data:
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nbcocluster |
Integer vector specifying the number of row and column clusters respectively. | |||||||||||||||||||||
strategy |
Object of class | |||||||||||||||||||||
a |
First hyper-parameter in case of Bayesian settings. Default is 1 (no prior). | |||||||||||||||||||||
b |
Second hyper-parameter in case of Bayesian settings. Default is 1 (no prior). | |||||||||||||||||||||
nbCore |
number of thread to use (OpenMP must be available), 0 for all cores. Default value is 1. |
Return an object of BinaryOptions
.
## Simple example with simulated binary data ## load data data(binarydata) ## usage of coclusterBinary function in its most simplest form out<-coclusterBinary(binarydata,nbcocluster=c(2,3)) ## Summarize the output results summary(out) ## Plot the original and Co-clustered data plot(out)
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