briskaR: Biological Risk Assessment

A spatio-temporal exposure-hazard model for assessing biological risk and impact. The model is based on stochastic geometry for describing the landscape and the exposed individuals, a dispersal kernel for the dissemination of contaminants and an ecotoxicological equation.

Author
Emily Walker [aut], Jean-Francois Rey [aut, cre], Melen Leclerc [aut], Samuel Soubeyrand [ctb], Marc Bourotte [ctb]
Date of publication
2016-10-11 12:42:45
Maintainer
Jean-Francois Rey <jean-francois.rey@inra.fr>
License
GPL (>= 2) | file LICENSE
Version
0.1.0

View on CRAN

Man pages

briskaR-package
Biological Risk Assessment
create.pollen.sources
Pollen sources emission simulation
demo.pollen.run
briskaR package pollen demonstration
ecoToxic
EcoToxicological model method
Individuals-class
Class Individuals
Individuals-getIndividualsLife-method
Method to get Individuals Life information
Individuals-get-methods
Get an individual information
Individuals-plot-methods
Plot method for Individuals-class
Individuals-print-class
print Individuals informations
Individuals-show-method
Show a summary of Individuals information
Landscape-class
Class Landscape
Landscape-constructor-class
simulateInitialPartition Method
Landscape-getSPSources-method
Method to get SpatialPolygons Sources from a Landscape
Landscape-Individuals-plot-method
plot Landscape & Individuals method
Landscape-load-class
Wrapper function : loadLandscape
Landscape-load-sig-class
Create a Landscape object from SIG shapefile file
Landscape-plot-method
Plot Method for a Landscape-class
Landscape-print-method
Print Method for Landscape
Landscape-save-tiff
Save Particles Dispersion 3D Array to tiff file
Landscape-show-method
Show Method for Landscape
Landscape-simulateThickMargins-method
simulateThickMargins Method
Landscape-toxicIntensity-method
toxicIntensity Method
load-Individuals-class
Wrapper function loadIndividuals
LoadInternProjection
Load an internal working projection PROJ.4
maize_65
Real Landscape
maize.emitted_pollen
Pollen sources emission from maize crop.
maize.individuals
Maize_65 Individuals repartitions
maize.landscape
Real Landscape maize_65 with attributs
maize.proportion_pollen
Maize Proportion Pollen
maize.toxicintensity61
Pollen dispersion at time 61 over the maize.landscape from...
plotEcotoxic
Plot internal toxic concentration method
Precipitation
Precipitation data
simulateIndividuals-constructor-class
Wrapper function SimulateIndividuals
simulateLandscape-constructor-class
SimulateLandscape Method

Files in this package

briskaR
briskaR/inst
briskaR/inst/doc
briskaR/inst/doc/demonstrations.html
briskaR/inst/doc/demonstrations.R
briskaR/inst/doc/demonstrations.Rmd
briskaR/NAMESPACE
briskaR/data
briskaR/data/maize.proportion_pollen.rda
briskaR/data/datalist
briskaR/data/maize.emitted_pollen.rda
briskaR/data/maize_65.rda
briskaR/data/Precipitation.rda
briskaR/R
briskaR/R/simulPrecip.R
briskaR/R/briskaR.R
briskaR/R/0briskaR.R
briskaR/R/Class-Individuals.R
briskaR/R/Class-Landscape.R
briskaR/R/toxicIntensity.R
briskaR/R/pollen-data.R
briskaR/R/demo.R
briskaR/R/ecoToxic.R
briskaR/R/Individuals-Methods.R
briskaR/R/Landscape-Methods.R
briskaR/R/Landscape-Individuals-Methods.R
briskaR/vignettes
briskaR/vignettes/toxic21.png
briskaR/vignettes/demonstrations.Rmd
briskaR/MD5
briskaR/build
briskaR/build/vignette.rds
briskaR/DESCRIPTION
briskaR/man
briskaR/man/Individuals-get-methods.Rd
briskaR/man/Individuals-class.Rd
briskaR/man/maize_65.Rd
briskaR/man/Landscape-toxicIntensity-method.Rd
briskaR/man/Precipitation.Rd
briskaR/man/maize.individuals.Rd
briskaR/man/Landscape-load-sig-class.Rd
briskaR/man/Landscape-getSPSources-method.Rd
briskaR/man/Landscape-print-method.Rd
briskaR/man/simulateIndividuals-constructor-class.Rd
briskaR/man/Individuals-show-method.Rd
briskaR/man/Landscape-show-method.Rd
briskaR/man/briskaR-package.Rd
briskaR/man/LoadInternProjection.Rd
briskaR/man/maize.emitted_pollen.Rd
briskaR/man/load-Individuals-class.Rd
briskaR/man/create.pollen.sources.Rd
briskaR/man/maize.proportion_pollen.Rd
briskaR/man/Landscape-Individuals-plot-method.Rd
briskaR/man/Landscape-plot-method.Rd
briskaR/man/maize.toxicintensity61.Rd
briskaR/man/plotEcotoxic.Rd
briskaR/man/demo.pollen.run.Rd
briskaR/man/Individuals-plot-methods.Rd
briskaR/man/Individuals-getIndividualsLife-method.Rd
briskaR/man/Landscape-load-class.Rd
briskaR/man/maize.landscape.Rd
briskaR/man/Landscape-simulateThickMargins-method.Rd
briskaR/man/Landscape-save-tiff.Rd
briskaR/man/ecoToxic.Rd
briskaR/man/Landscape-constructor-class.Rd
briskaR/man/simulateLandscape-constructor-class.Rd
briskaR/man/Individuals-print-class.Rd
briskaR/man/Landscape-class.Rd
briskaR/LICENSE