briskaR: Biological Risk Assessment

A spatio-temporal exposure-hazard model for assessing biological risk and impact. The model is based on stochastic geometry for describing the landscape and the exposed individuals, a dispersal kernel for the dissemination of contaminants and an ecotoxicological equation.

AuthorEmily Walker [aut], Jean-Francois Rey [aut, cre], Melen Leclerc [aut], Samuel Soubeyrand [ctb], Marc Bourotte [ctb]
Date of publication2016-10-11 12:42:45
MaintainerJean-Francois Rey <jean-francois.rey@inra.fr>
LicenseGPL (>= 2) | file LICENSE
Version0.1.0

View on CRAN

Man pages

briskaR-package: Biological Risk Assessment

create.pollen.sources: Pollen sources emission simulation

demo.pollen.run: briskaR package pollen demonstration

ecoToxic: EcoToxicological model method

Individuals-class: Class Individuals

Individuals-getIndividualsLife-method: Method to get Individuals Life information

Individuals-get-methods: Get an individual information

Individuals-plot-methods: Plot method for Individuals-class

Individuals-print-class: print Individuals informations

Individuals-show-method: Show a summary of Individuals information

Landscape-class: Class Landscape

Landscape-constructor-class: simulateInitialPartition Method

Landscape-getSPSources-method: Method to get SpatialPolygons Sources from a Landscape

Landscape-Individuals-plot-method: plot Landscape & Individuals method

Landscape-load-class: Wrapper function : loadLandscape

Landscape-load-sig-class: Create a Landscape object from SIG shapefile file

Landscape-plot-method: Plot Method for a Landscape-class

Landscape-print-method: Print Method for Landscape

Landscape-save-tiff: Save Particles Dispersion 3D Array to tiff file

Landscape-show-method: Show Method for Landscape

Landscape-simulateThickMargins-method: simulateThickMargins Method

Landscape-toxicIntensity-method: toxicIntensity Method

load-Individuals-class: Wrapper function loadIndividuals

LoadInternProjection: Load an internal working projection PROJ.4

maize_65: Real Landscape

maize.emitted_pollen: Pollen sources emission from maize crop.

maize.individuals: Maize_65 Individuals repartitions

maize.landscape: Real Landscape maize_65 with attributs

maize.proportion_pollen: Maize Proportion Pollen

maize.toxicintensity61: Pollen dispersion at time 61 over the maize.landscape from...

plotEcotoxic: Plot internal toxic concentration method

Precipitation: Precipitation data

simulateIndividuals-constructor-class: Wrapper function SimulateIndividuals

simulateLandscape-constructor-class: SimulateLandscape Method

Functions

briskaR Man page
briskaR-demo Man page
briskaRLoadInternProjection Man page
briskaR-package Man page
create.pollen.sources Man page
demo.pollen.run Man page
ecoToxic Man page
ecoToxic,Landscape,Individuals-method Man page
ecotoxicological-method Man page
getIndividualsLife Man page
getIndividualsLife,Individuals-method Man page
getSPSources Man page
getSPSources,Landscape-method Man page
Individuals Man page
[,Individuals Man page
Individuals-class Man page
[,Individuals,numeric,missing,ANY-method Man page
[,Individuals,numeric,numeric,ANY-method Man page
Individuals plot Man page
Landscape Man page
Landscape-class Man page
Landscape,getSPSources-method Man page
loadIndividuals Man page
LoadInternProjection Man page
loadLandscape Man page
loadLandscapeSIG Man page
maize_65 Man page
maize.emitted_pollen Man page
maize.individuals Man page
maize.landscape Man page
maize.proportion_pollen Man page
maize.toxicintensity61 Man page
_PACKAGE Man page
plotEcotoxic Man page
plotEcoToxic Man page
plot,Individuals,ANY-method Man page
plot,Individuals,numeric-method Man page
plot,Individuals,num-method Man page
plot,Landscape,ANY-method Man page
plot Landscape-class Man page
plot,Landscape,Individuals-method Man page
Precipitation Man page
print,Individuals-method Man page
print,Landscape-method Man page
saveIntoFile Man page
show,Individuals-method Man page
show,Landscape-method Man page
simulateIndividuals Man page
simulateInitialPartition Man page
simulateLandscape Man page
simulateThickMargins Man page
simulateThickMargins,Landscape-method Man page
toxicIntensity Man page
toxicIntensity,Landscape-method Man page

Files

briskaR
briskaR/inst
briskaR/inst/doc
briskaR/inst/doc/demonstrations.html
briskaR/inst/doc/demonstrations.R
briskaR/inst/doc/demonstrations.Rmd
briskaR/NAMESPACE
briskaR/data
briskaR/data/maize.proportion_pollen.rda
briskaR/data/datalist
briskaR/data/maize.emitted_pollen.rda
briskaR/data/maize_65.rda
briskaR/data/Precipitation.rda
briskaR/R
briskaR/R/simulPrecip.R briskaR/R/briskaR.R briskaR/R/0briskaR.R briskaR/R/Class-Individuals.R briskaR/R/Class-Landscape.R briskaR/R/toxicIntensity.R briskaR/R/pollen-data.R briskaR/R/demo.R briskaR/R/ecoToxic.R briskaR/R/Individuals-Methods.R briskaR/R/Landscape-Methods.R briskaR/R/Landscape-Individuals-Methods.R
briskaR/vignettes
briskaR/vignettes/toxic21.png
briskaR/vignettes/demonstrations.Rmd
briskaR/MD5
briskaR/build
briskaR/build/vignette.rds
briskaR/DESCRIPTION
briskaR/man
briskaR/man/Individuals-get-methods.Rd briskaR/man/Individuals-class.Rd briskaR/man/maize_65.Rd briskaR/man/Landscape-toxicIntensity-method.Rd briskaR/man/Precipitation.Rd briskaR/man/maize.individuals.Rd briskaR/man/Landscape-load-sig-class.Rd briskaR/man/Landscape-getSPSources-method.Rd briskaR/man/Landscape-print-method.Rd briskaR/man/simulateIndividuals-constructor-class.Rd briskaR/man/Individuals-show-method.Rd briskaR/man/Landscape-show-method.Rd briskaR/man/briskaR-package.Rd briskaR/man/LoadInternProjection.Rd briskaR/man/maize.emitted_pollen.Rd briskaR/man/load-Individuals-class.Rd briskaR/man/create.pollen.sources.Rd briskaR/man/maize.proportion_pollen.Rd briskaR/man/Landscape-Individuals-plot-method.Rd briskaR/man/Landscape-plot-method.Rd briskaR/man/maize.toxicintensity61.Rd briskaR/man/plotEcotoxic.Rd briskaR/man/demo.pollen.run.Rd briskaR/man/Individuals-plot-methods.Rd briskaR/man/Individuals-getIndividualsLife-method.Rd briskaR/man/Landscape-load-class.Rd briskaR/man/maize.landscape.Rd briskaR/man/Landscape-simulateThickMargins-method.Rd briskaR/man/Landscape-save-tiff.Rd briskaR/man/ecoToxic.Rd briskaR/man/Landscape-constructor-class.Rd briskaR/man/simulateLandscape-constructor-class.Rd briskaR/man/Individuals-print-class.Rd briskaR/man/Landscape-class.Rd
briskaR/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.