hssm: Fits hierarchical state-space models to Argos data

Description Usage Arguments Value See Also

Description

Takes output from dat4jags, sets up initial values, calls JAGS, and aggregates results. Intended for internal use, called by fit_ssm.

Usage

1
hssm(d, model = "hDCRWS", adapt, samples, thin, chains, span)

Arguments

d

structured data from dat4jags to be passed to JAGS

model

the state-space model to be fit: hDCRW or hDCRWS

adapt

number of samples in adaptation/burnin phase

samples

number of posterior samples

thin

thinning factor to reduce posterior sample autocorrelation

chains

number of parallel McMC chains to run

span

span

Value

Returns a list of McMC samples from marginal posteriors and a summary data.frame of mean and median position estimates.

See Also

Function to be called by fit_ssm.


bsam documentation built on Sept. 1, 2020, 5:09 p.m.