ssm: Fits state-space models to Argos data

In bsam: Bayesian State-Space Models for Animal Movement

Description

Takes output from dat4jags, sets up initial values, calls JAGS, and aggregates results. Intended for internal use, called by fit_ssm.

Usage

ssm(d, model = "DCRW", adapt, samples, thin, chains, span)

Arguments

d	structured data from dat4jags to be passed to JAGS
model	the state-space model to be fit: DCRW or DCRWS
adapt	number of samples in adaptation/burnin phase
samples	number of posterior samples
thin	thinning factor to reduce posterior sample autocorrelation
chains	number of parallel McMC chains to run
span	span

Value

Returns a list of McMC samples from marginal posteriors and a summary data.frame of mean and median position estimates.

See Also

Function to be called by fit_ssm.

bsam documentation built on Sept. 1, 2020, 5:09 p.m.