cati: Community Assembly by Traits: Individuals and Beyond

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Detect and quantify community assembly processes using trait values of individuals or populations, the T-statistics and other metrics, and dedicated null models.

Author
Adrien Taudiere, Cyrille Violle with contribution by Francois Munoz
Date of publication
2016-03-15 15:10:25
Maintainer
Adrien Taudiere <adrien.taudiere@cefe.cnrs.fr>
License
GPL (>= 2)
Version
0.99.1
URLs

View on CRAN

Man pages

AbToInd
Internal function. Transform abundance data matrix into...
as.listofindex
Transform index results in a list of index
cati-package
Community Assembly by Traits: Individuals and Beyond
ComIndex
Computing metrics to test and quantify the non-random...
ComIndexMulti
Computing multitraits metrics to test and quantify the...
CVNND
Coefficient of variation, mean, minimum and standard...
decompCTRE
Variance partitioning for multiple traits
finch.ind
Finch morphological data
Fred
Functional richness, evenness and divergence following...
IndexByGroups
Apply metrics to groups.
MinMaxMST
Ratio of the shortest distance to the longest distance in a...
partvar
Variance partitioning accross nested scales
plotCorTstats
Plot the bivariate relationships between T-statistics
plotDistri
Plot function to represent density of trait values
plot.listofindex
Plot community assembly index
plotRandtest
Plot result of observed indices values against null...
plotSESvar
Plot SES values against a variable
plotSpPop
Plot populations values against species values
plotSpVar
Plot populations values against species values
Pval
Calcul of p-value for object of class Tstats, ComIndex,...
RandCom
Toy model to simulate internal and/or external filtering
RaoRel
Alpha, gamma and beta-components for taxonomic, functional...
samplingSubsetData
Sampling subset of data.
ses
Standardized effect size and confidence interval for a matrix...
ses.listofindex
Standardized effect size for a list of index.
SumBL
Sum of branch length of a classification dendrogram (Petchey...
traitflex.anova
Variance decomposition for a given trait used in decompCTRE
Tstats
Computing observed T-statistics (T for Traits) and null...

Files in this package

cati
cati/inst
cati/inst/CITATION
cati/NAMESPACE
cati/data
cati/data/finch.ind.RData
cati/R
cati/R/allfunctions_cati.R
cati/MD5
cati/DESCRIPTION
cati/man
cati/man/plotSESvar.Rd
cati/man/ses.listofindex.Rd
cati/man/Pval.Rd
cati/man/ComIndexMulti.Rd
cati/man/plotSpVar.Rd
cati/man/SumBL.Rd
cati/man/plotRandtest.Rd
cati/man/ComIndex.Rd
cati/man/ses.Rd
cati/man/Tstats.Rd
cati/man/as.listofindex.Rd
cati/man/samplingSubsetData.Rd
cati/man/CVNND.Rd
cati/man/traitflex.anova.Rd
cati/man/Fred.Rd
cati/man/MinMaxMST.Rd
cati/man/finch.ind.Rd
cati/man/RaoRel.Rd
cati/man/plotSpPop.Rd
cati/man/RandCom.Rd
cati/man/plot.listofindex.Rd
cati/man/AbToInd.Rd
cati/man/Auxiliary.functions.rd
cati/man/IndexByGroups.Rd
cati/man/decompCTRE.Rd
cati/man/plotDistri.Rd
cati/man/partvar.Rd
cati/man/plotCorTstats.Rd
cati/man/cati-package.Rd