AbToInd: Internal function. Transform abundance data matrix into...

Description Usage Arguments Details Value Author(s)

View source: R/allfunctions_cati.R

Description

Transform abundance data matrix into individual like matrix to allows the use of ComIndex and ComIndexMulti on populationnal or specific traits values.

Usage

1
	AbToInd(traits, com, type.sp.val = "count")

Arguments

traits

Individual Matrix of traits with traits in columns. "traits" matrix must have row names (e.g. species or populationnal names).

com

Community data matrix with species in rows and sites in column.

type.sp.val

Either "count" or "abundance". Use abundance when all values in the com matrix are not superior to one. Using abundance is EXPERIMENTAL. This function round abundance to fit count data.

Details

Internal function

Value

A list of objects:

$traits

Individual traits matrix

$sp

Vector of species attributes

$ind.plot

Vector of sites attributes

Author(s)

Adrien Taudiere


cati documentation built on May 30, 2017, 12:41 a.m.