Man pages for cati
Community Assembly by Traits: Individuals and Beyond
| AbToInd | Internal function. Transform abundance data matrix into... |
| as.listofindex | Transform index results in a list of index |
| Auxiliary.functions | Auxiliary functions |
| ComIndex | Computing metrics to test and quantify the non-random... |
| ComIndexMulti | Computing multitraits metrics to test and quantify the... |
| CVNND | Coefficient of variation, mean, minimum and standard... |
| decompCTRE | Variance partitioning for multiple traits |
| finch.ind | Finch morphological data |
| Fred | Functional richness, evenness and divergence following... |
| IndexByGroups | Apply metrics to groups. |
| MinMaxMST | Ratio of the shortest distance to the longest distance in a... |
| partvar | Variance partitioning accross nested scales |
| plotCorTstats | Plot the bivariate relationships between T-statistics |
| plotDistri | Plot function to represent density of trait values |
| plot.listofindex | Plot community assembly index |
| plotRandtest | Plot result of observed indices values against null... |
| plotSESvar | Plot SES values against a variable |
| plotSpPop | Plot populations values against species values |
| plotSpVar | Plot populations values against species values |
| Pval | Calcul of p-value for object of class Tstats, ComIndex,... |
| RandCom | Toy model to simulate internal and/or external filtering |
| RaoRel | Alpha, gamma and beta-components for taxonomic, functional... |
| samplingSubsetData | Sampling subset of data. |
| ses | Standardized effect size and confidence interval for a matrix... |
| ses.listofindex | Standardized effect size for a list of index. |
| SumBL | Sum of branch length of a classification dendrogram (Petchey... |
| traitflex.anova | Variance decomposition for a given trait used in decompCTRE |
| Tstats | Computing observed T-statistics (T for Traits) and null... |
