plot.profile.cauphyfit: Plot for class 'profile.cauphyfit'

In cauphy: Trait Evolution on Phylogenies Using the Cauchy Process

Plot for class profile.cauphyfit

Description

This function takes an object of class profile.cauphyfit, and plots the profile likelihood for each parameter.

Usage

## S3 method for class 'profile.cauphyfit'
plot(x, n_col, ...)

Arguments

x	an object of class profile.cauphyfit
n_col	the number of columns on which to display the plot. Can be left blank.
...	further arguments to be passed to plot.

Value

None.

See Also

profile.cauphyfit, fitCauchy.

Examples

phy <- ape::rphylo(5, 0.1, 0)
dat <- rTraitCauchy(n = 1, phy = phy, model = "cauchy", parameters = list(root.value = 0, disp = 1))
fit <- fitCauchy(phy, dat, model = "cauchy", method = "fixed.root")
pr <- profile(fit)
plot(pr)

cauphy documentation built on Oct. 1, 2024, 5:08 p.m.