Files in causalDisco

Tools for Causal Discovery on Observational Data

MD5

NEWS.md

NAMESPACE

DESCRIPTION

R/causalDisco-package.R R/gs.R R/boss-fci.R R/grasp-fci.R R/tges.R R/knowledge-conversions.R R/edges.R R/aaa-globals.R R/disco-doc-helpers.R R/tabu.R R/fci.R R/conditional-independence.R R/metrics.R R/tfci.R R/simulation.R R/data.R R/aaa-init-helpers.R R/tfci-run.R R/check-args.R R/engine-registry.R R/tetrad-search.R R/pcalg-search.R R/boss.R R/ges.R R/plot.R R/misc.R R/gfci.R R/sp-fci.R R/disco-class.R R/caugi-helpers.R R/make-tikz-helpers.R R/check-knowledge-violations.R R/knowledge-verbs.R R/make-tikz.R R/knowledge.R R/aaa-iamb-family.R R/cast-obj.R R/tpc.R R/runners.R R/tges-run.R R/disco.R R/extend-causaldisco-algs.R R/alg-bugs.R R/constraint-based-run-helpers.R R/tetrad-rdata-utils.R R/grasp.R R/print-helpers.R R/knowledge-helpers.R R/zzz.R R/tpc-run.R R/install-tetrad.R R/bnlearn-search.R R/tetrad-graph.R R/hc.R R/metric-helpers.R R/iamb-family.R R/knowledge-manipulation.R R/disco-method.R R/pc.R R/pcalg-type-tests.R R/causalDisco-search.R

inst/WORDLIST

inst/doc/visualization.R

inst/doc/knowledge.html

inst/doc/visualization.qmd

inst/doc/visualization.html

inst/doc/causal-discovery.qmd

inst/doc/causal-discovery.R

inst/doc/causal-discovery.html

inst/doc/new-algorithm.R

inst/doc/causalDisco.html

inst/doc/custom-ci-tests.R

inst/doc/causalDisco.qmd

inst/doc/knowledge.R

inst/doc/custom-ci-tests.html

inst/doc/knowledge.qmd

inst/doc/causalDisco.R

inst/doc/custom-ci-tests.qmd

inst/doc/new-algorithm.html

inst/doc/new-algorithm.qmd

inst/roxygen-examples/deparse_knowledge-example.R inst/roxygen-examples/gfci-example.R inst/roxygen-examples/get_tiers-example.R inst/roxygen-examples/tpdag-example.R inst/roxygen-examples/hc-example.R inst/roxygen-examples/knowledge-example.R inst/roxygen-examples/pc-example.R inst/roxygen-examples/dot-formula_vars-example.R inst/roxygen-examples/as_tetrad_knowledge-example.R inst/roxygen-examples/make-tikz-example.R inst/roxygen-examples/check_args-example.R inst/roxygen-examples/dot-edge_verb-example.R inst/roxygen-examples/make_suff_stat-example.R inst/roxygen-examples/pcalg_search-example.R inst/roxygen-examples/causalDisco-search-example.R inst/roxygen-examples/reorder_tiers-example.R inst/roxygen-examples/dot-read_line-example.R inst/roxygen-examples/find_adjacencies-example.R inst/roxygen-examples/tetrad_graph-example.R inst/roxygen-examples/remove_from_knowledge-example.R inst/roxygen-examples/unfreeze-example.R inst/roxygen-examples/init_java-example.R inst/roxygen-examples/default_heap-example.R inst/roxygen-examples/dot-new_knowledge-example.R inst/roxygen-examples/parse_heap_gb-example.R inst/roxygen-examples/grasp-example.R inst/roxygen-examples/boss-example.R inst/roxygen-examples/v_orient_temporal-example.R inst/roxygen-examples/grasp_fci-example.R inst/roxygen-examples/create_adj_matrix_from_list_from_adj-example.R inst/roxygen-examples/tabu-example.R inst/roxygen-examples/bnlearn-search-example.R inst/roxygen-examples/sp-fci-example.R inst/roxygen-examples/tbic-example.R inst/roxygen-examples/tetrad-search-example.R inst/roxygen-examples/dot-vars_from_spec-example.R inst/roxygen-examples/forbid_tier_violations-example.R inst/roxygen-examples/iamb-family-example.R inst/roxygen-examples/dot-tier_index-example.R inst/roxygen-examples/as_pcalg_constraints-example.R inst/roxygen-examples/knowledge_verbs-example.R inst/roxygen-examples/dot-validate_forbidden_required-example.R inst/roxygen-examples/tpc-example.R inst/roxygen-examples/dot-build_knowledge_from_order-example.R inst/roxygen-examples/current_heap_gb-example.R inst/roxygen-examples/rdata_to_tetrad_data-example.R inst/roxygen-examples/dot-pcalg_constraints_from_knowledge-example.R inst/roxygen-examples/disco_method-example.R inst/roxygen-examples/is_knowledge-example.R inst/roxygen-examples/seq_tiers-example.R inst/roxygen-examples/reposition_tier-example.R inst/roxygen-examples/fci-example.R inst/roxygen-examples/order_restrict_pag_skel-example.R inst/roxygen-examples/dot-validate_tier_rule-example.R inst/roxygen-examples/gs-example.R inst/roxygen-examples/ges-example.R inst/roxygen-examples/dot-add_edges-example.R inst/roxygen-examples/cast_obj-example.R inst/roxygen-examples/tfci-example.R inst/roxygen-examples/disco-example.R inst/roxygen-examples/dot-check_if_pkgs_are_installed-example.R inst/roxygen-examples/boss-fci-example.R inst/roxygen-examples/plus-knowledge-example.R inst/roxygen-examples/ask_heap_size-example.R inst/roxygen-examples/order_restrict_sepset-example.R inst/roxygen-examples/tges-example.R inst/roxygen-examples/order_restrict_amat_cpdag-example.R inst/roxygen-examples/dir_test-example.R inst/roxygen-examples/as_bnlearn_knowledge-example.R inst/roxygen-examples/tpag-example.R inst/roxygen-examples/pcalg-search-example.R inst/roxygen-examples/tbdeu-example.R

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/spelling.R tests/testthat/test-tetrad-args.R tests/testthat/test-tfci.R tests/testthat/test-alg-bugs.R tests/testthat/test-extend-causaldisco-algs.R tests/testthat/test-tges-run.R tests/testthat/test-plot.R tests/testthat/helper-constraint-based-methods.R tests/testthat/test-disco-method-disco.R tests/testthat/test-fci.R tests/testthat/helper-score-based-methods.R tests/testthat/test-metrics.R tests/testthat/test-bnlearn-search.R tests/testthat/test-knowledge-manipulation.R tests/testthat/test-causalDisco-search.R tests/testthat/test-zzz.R tests/testthat/test-pcalg-args.R tests/testthat/helper-run-functions.R tests/testthat/test-custom-test.R tests/testthat/test-pc.R tests/testthat/test-grasp.R tests/testthat/test-knowledge.R tests/testthat/test-misc.R tests/testthat/test-tpc.R tests/testthat/test-ges.R tests/testthat/test-cast-obj.R tests/testthat/test-disco-class.R tests/testthat/test-make-tikz.R tests/testthat/test-java-rdata-utils.R tests/testthat/test-iamb-family.R tests/testthat/test-hc.R tests/testthat/test-tetrad-rdata-utils.R tests/testthat/test-boss.R tests/testthat/test-constraint-based-run-helpers.R tests/testthat/test-micd-based-tests.R tests/testthat/test-tetrad-graph.R tests/testthat/test-init-java.R tests/testthat/test-metric-helpers.R tests/testthat/test-tges.R tests/testthat/test-pcalg-search.R tests/testthat/test-bnlearn-args.R tests/testthat/helper-mock-rjava.R tests/testthat/test-check-args.R tests/testthat/test-gfci.R tests/testthat/Rplots.pdf tests/testthat/test-make-tikz-helpers.R tests/testthat/test-score-based-methods.R tests/testthat/custom-tests-scores.R tests/testthat/test-grasp-fci.R tests/testthat/helper-tetrad.R tests/testthat/test-tabu.R tests/testthat/test-boss-fci.R tests/testthat/helper-metric-helpers.R tests/testthat/test-tpc-run.R tests/testthat/test-tetrad-search.R tests/testthat/test-constraint-based-methods.R tests/testthat/test-simulation.R tests/testthat/helper-install-tetrad.R tests/testthat/test-knowledge-conversions.R tests/testthat/test-pcalg-type-tests.R tests/testthat/setup.R tests/testthat/test-conditional-independence.R tests/testthat/test-sp-fci.R tests/testthat/test-knowledge-verbs.R tests/testthat/test-install-tetrad.R tests/testthat/test-default-heap.R tests/testthat/helper-test-algs.R tests/testthat/helper-knowledge.R tests/testthat/test-gs.R tests/testthat/test-tfci-run.R tests/testthat/test-parse-heap-gb.R tests/testthat/test-startup.R tests/testthat/_snaps/knowledge.md

vignettes/visualization.qmd

vignettes/causal-discovery.qmd

vignettes/causalDisco.qmd

vignettes/custom-boss-variant-pkgdown.png

vignettes/ges-ebic-tetrad-pkgdown.png

vignettes/custom-boss-variant-cran.png

vignettes/tikz-tier-plot.png

vignettes/knowledge.qmd

vignettes/ges-ebic-tetrad-cran.png

vignettes/custom-ci-tests.qmd

vignettes/new-algorithm.qmd

data/cat_data.rda

data/cat_ord_data.rda

data/num_data.rda

data/mix_data.rda

data/num_data_latent.rda

data/tpc_example.rda

data/cat_data_mcar.rda

man/mix_data.Rd man/summary.Disco.Rd man/g1_score.Rd man/fdr.Rd man/deparse_knowledge.Rd man/plus-.Knowledge.Rd man/evaluate.Rd man/remove_tiers.Rd man/make_tikz.Rd man/BnlearnSearch.Rd man/reset_tetrad_alg_registry.Rd man/knowledge_to_caugi.Rd man/false_omission_rate.Rd man/reexports.Rd man/grasp.Rd man/tges_run.Rd man/tpc.Rd man/specificity.Rd man/plot.Disco.Rd man/verify_tetrad.Rd man/tges.Rd man/tpc_example.Rd man/CausalDiscoSearch.Rd man/new_disco_method.Rd man/gs.Rd man/recall.Rd man/TemporalBDeu-class.Rd man/f1_score.Rd man/list_registered_tetrad_algorithms.Rd man/fci.Rd man/boss_fci.Rd man/convert_tiers_to_forbidden.Rd man/tfci.Rd man/register_tetrad_algorithm.Rd man/add_vars.Rd man/tfci_run.Rd man/seq_tiers.Rd man/remove_vars.Rd man/as_pcalg_constraints.Rd man/disco_algs_return_doc_dag.Rd man/causalDisco-package.Rd man/reposition_tier.Rd man/disco_algs_return_doc_pdag.Rd man/add_to_tier.Rd man/as_tetrad_knowledge.Rd man/add_exogenous.Rd man/boss.Rd man/knowledge.Rd man/install_tetrad.Rd man/as_bnlearn_knowledge.Rd man/sp_fci.Rd man/TemporalBIC-class.Rd man/disco_algs_return_doc_pag.Rd man/reg_test.Rd man/cor_test.Rd man/disco_note.Rd man/summary.Knowledge.Rd man/precision.Rd man/forbid_edge.Rd man/plot.Knowledge.Rd man/gfci.Rd man/make_method.Rd man/iamb-family.Rd man/TetradSearch.Rd man/confusion.Rd man/num_data_latent.Rd man/npv.Rd man/reorder_tiers.Rd man/pc.Rd man/plot.Rd man/num_data.Rd man/grasp_fci.Rd man/cat_data_mcar.Rd man/print.Knowledge.Rd man/PcalgSearch.Rd man/print.Disco.Rd man/get_tiers.Rd man/cat_ord_data.Rd man/tpc_run.Rd man/require_edge.Rd man/cat_data.Rd man/disco.Rd man/unfreeze.Rd man/ges.Rd man/set_knowledge.Rd man/add_tier.Rd man/generate_dag_data.Rd man/distribute_engine_args.Rd man/make_runner.Rd man/sim_dag.Rd man/remove_edge.Rd

man/figures/lifecycle-stable.svg

man/figures/uncropped-logo-v1.png

man/figures/lifecycle-superseded.svg

man/figures/logo.png

man/figures/logo-v1.png

man/figures/uncropped-logo.png

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-deprecated.svg

causalDisco documentation built on April 13, 2026, 5:06 p.m.