cg: Compare Groups, Analytically and Graphically

Share:

Comprehensive data analysis software, and the name "cg" stands for "compare groups." Its genesis and evolution are driven by common needs to compare administrations, conditions, etc. in medicine research and development. The current version provides comparisons of unpaired samples, i.e. a linear model with one factor of at least two levels. It also provides comparisons of two paired samples. Good data graphs, modern statistical methods, and useful displays of results are emphasized.

Author
Bill Pikounis [aut, cre, cph], John Oleynick [aut], Eva Ye [ctb]
Date of publication
2016-01-04 23:10:36
Maintainer
Bill Pikounis <cg@billpikounis.net>
License
GPL-2 | GPL-3
Version
1.0-3

View on CRAN

Man pages

anorexiaFT
AnorexiaFT Data Set in the cg package
boxplot.cgOneFactorData
Box Plot Graph of Groups from a cgOneFactorData object
canine
Canine Data Set in the cg package
canine.listfmt
Canine Data Set in the cg package
cgInternalClasses
cg package Internal Virtual Classes
cgInternalUtilities
cg package Internal Utilities
cgLineColors
Color Choice order for Graph Lines
cg-package
Compare Groups, Analytically and Graphically
cgValidity
cg package Validity Checks
comparisons
Create a table of comparisons amongst groups
comparisonsgraph
Create an graph of comparisons
comparisonsGraph.cgOneFactorComparisonsTable
Create an graph of the comparisons in a...
comparisonsGraph.cgPairedDifferenceComparisonsTable
Create an graph of the comparisons in a...
comparisonsGraphGeneric
Graph comparisons specified amongst groups
comparisonsTable
Create a Table of Comparisons amongst Groups
comparisonsTable.cgOneFactorFit
Create a table of comparisons amongst groups with the...
comparisonsTable.cgPairedDifferenceFit
Create a table of comparisons between two groups with the...
correlationTable
Compute Correlations
correlationTable.cgPairedDifferenceData
Compute Correlations from a cgPairedDifferenceData object
descriptiveTable
Compute Descriptive Summary Statistics of Groups
descriptiveTable.cgOneFactorData
Compute Descriptive Summary Statistics of Groups in a...
descriptiveTable.cgPairedDifferenceData
Compute Descriptive Summary Statistics of Groups in a...
diffGraph
Graph Paired Differences
diffGraph.cgPairedDifferenceData
Graph Paired Differences from a cgPairedDifferenceData object
downweightedTable
Create a table of downweighted observations from a Resistant...
downweightedTable.cgOneFactorFit
Create a table of downweighted observations from a Resistant...
downweightedTable.cgPairedDifferenceFit
Create a table of downweighted observations from a Resistant...
errorbargraph
Create an error bar graph based on pairwise multiple...
errorBarGraph.cgOneFactorFit
Create an Error Bar graph amongst groups in a cgOneFactorFit...
errorBarGraphGeneric
Create an Error Bar graph amongst groups
fit
Fit models to data
fit.cgOneFactorData
Fit models to a cgOneFactorData object
fit.cgPairedDifferenceData
Fit models to a cgPairedDifferenceData object
globalTest
Perform a global test of significance
globalTest.cgOneFactorFit
Perform a global Test of significance with cgOneFactorFit...
gmcsfcens
GM-CSF censored data set in the cg package
gmcsfcens.listfmt
GM-CSF censored data set in the cg package
grpSummaryTable
Create a table of estimated group means and variability
grpSummaryTable.cgOneFactorFit
Create a table of estimated group means and variability with...
kmGraph
Graph Distribution Functions of Groups
kmGraph.cgOneFactorData
Graph Distribution Functions of Groups in a cgOneFactorData...
pointGraph
Graph Individual Data Points of Groups
pointGraph.cgOneFactorData
Graph Individual Data Points in a cgOneFactorData object
prepare
Prepare a cg data object from a data frame
prepareCGOneFactorData
Prepare data object from a data frame for One Factor /...
prepareCGPairedDifferenceData
Prepare data object from a data frame for Paired Samples...
print.cgOneFactorComparisonsTable
Print One Factor Comparisons Table object with some format...
print.cgOneFactorDescriptiveTable
Print a One Factor Descriptive Table object with some format...
print.cgOneFactorDownweightedTable
Print Downweighted Observations Table object with some format...
print.cgOneFactorFit
Print One Factor Model Fit object with some format options
print.cgOneFactorGlobalTest
Print One Factor Global F-test object with some format...
print.cgOneFactorGrpSummaryTable
Print One Factor Group Summary Table object with some format...
print.cgOneFactorSampleSizeTable
Print a One Factor Sample Size Table object with some format...
print.cgPairedDifferenceComparisonsTable
Print Paired Difference Comparisons Table object with some...
print.cgPairedDifferenceCorrelationTable
Print a Paired Difference Correlation Table object with some...
print.cgPairedDifferenceDescriptiveTable
Print a Paired Difference Descriptive Table object with some...
print.cgPairedDifferenceDownweightedTable
Print Downweighted Observations Table object with some format...
print.cgPairedDifferenceFit
Print One Factor Model Fit object with some format options
print.cgPairedDifferenceSampleSizeTable
Print a Paired Difference Sample Size Table object with some...
print.cgPairedDifferenceVarianceTable
Print a Paired Difference Variance Table object with some...
profileGraph
Graph Profiles of Experimental Units
profileGraph.cgPairedDifferenceData
Graph Profiles of Experimental Unit Pairs in a...
qqGraph
Quantile-Quantile Graphs
qqGraph.cgOneFactorFit
Quantile-Quantile (QQ) Graphs of a cgOneFactorFit object
qqGraph.cgPairedDifferenceFit
Quantile-Quantile (QQ) Graphs of a cgPairedDifferenceFit...
samplesizeGraph
Graph Estimated Sample Sizes
samplesizeGraph.cgOneFactorSampleSizeTable
Graph estimated sample sizes from a...
samplesizeGraph.cgPairedDifferenceSampleSizeTable
Graph estimated sample sizes from a...
samplesizeTable
Estimate Required Sample Sizes
samplesizeTable.cgOneFactorFit
Estimate Sample Sizes based on a cgOneFactorFit object
samplesizeTable.cgPairedDifferenceFit
Estimate Sample Sizes based on a cgPairedDifferenceFit object
show.cgOneFactorComparisonsTable
Show a One Factor Comparisons Table object from the cg...
show.cgOneFactorDescriptiveTable
Show a One Factor Descriptive Table object from the cg...
show.cgOneFactorDownweightedTable
Show a One Factor Downweighted Table object from the cg...
show.cgOneFactorGlobalTest
Show a Global Test object from the cg package
show.cgOneFactorGrpSummaryTable
Show a One Factor Group Summary Table object from the cg...
show.cgOneFactorSampleSizeTable
Show a One Factor Sample Size Table object from the cg...
show.cgPairedDifferenceComparisonsTable
Show a Paired Difference Data Comparisons Table object from...
show.cgPairedDifferenceCorrelationTable
Show a Paired Difference Correlation Table object from the cg...
show.cgPairedDifferenceDescriptiveTable
Show a Paired Difference Descriptive Table object from the cg...
show.cgPairedDifferenceDownweightedTable
Show a Paired Difference Downweighted Table object from the...
show.cgPairedDifferenceSampleSizeTable
Show a Paired Difference Sample Size Table object from the cg...
show.cgPairedDifferenceVarianceTable
Show a Paired Difference Variance Table object from the cg...
showObj
Show raw form of an object from the cg package
showObj.cgOneFactorFit
Show a Fitted Model object from the cg package
showObj.cgPairedDifferenceFit
Show a Fitted Model object from the cg package
summary.cgOneFactorFit
Summary display of a One Factor Model Fit object with some...
summary.cgPairedDifferenceFit
Summary display of a Paired Difference Model Fit object with...
varianceGraph
Variance Graphs
varianceGraph.cgOneFactorFit
Equal Variance Graphs assessment of cgOneFactorFit object
varianceTable
Compute Variance Components
varianceTable.cgPairedDifferenceFit
Compute Variances from a cgPairedDifferenceFit object

Files in this package

cg
cg/inst
cg/inst/CITATION
cg/inst/NEWS
cg/NAMESPACE
cg/data
cg/data/gmcsfcens.tab.gz
cg/data/gmcsfcens.listfmt3.rda
cg/data/gmcsfcens.listfmt3.tab.gz
cg/data/gmcsfcens.listfmt1.rda
cg/data/anorexiaFT.tab.gz
cg/data/gmcsfcens.listfmt2.rda
cg/data/canine.tab.gz
cg/data/gmcsfcens.listfmt2.tab.gz
cg/data/gmcsfcens.listfmt1.tab.gz
cg/data/canine.listfmt.tab.gz
cg/data/canine.listfmt.rda
cg/data/anorexiaFT.rda
cg/data/gmcsfcens.rda
cg/data/canine.rda
cg/R
cg/R/p03FormalOneFactorData.R
cg/R/version.R
cg/R/p14DiagnosticsPairedDifferenceData.R
cg/R/p12DescriptivePairedDifferenceData.R
cg/R/p00ReadInOneFactorData.R
cg/R/p05SampleSizeOneFactorData.R
cg/R/generics.R
cg/R/utilities.R
cg/R/p01FitOneFactorData.R
cg/R/valid.R
cg/R/00virtual.R
cg/R/p10ReadInPairedDifferenceData.R
cg/R/p02DescriptiveOneFactorData.R
cg/R/p15SampleSizePairedDifferenceData.R
cg/R/p11FitPairedDifferenceData.R
cg/R/p04DiagnosticsOneFactorData.R
cg/R/p13FormalPairedDifferenceData.R
cg/MD5
cg/DESCRIPTION
cg/man
cg/man/print.cgPairedDifferenceDownweightedTable.Rd
cg/man/diffGraph.Rd
cg/man/correlationTable.cgPairedDifferenceData.Rd
cg/man/cgValidity.Rd
cg/man/cgInternalUtilities.Rd
cg/man/fit.Rd
cg/man/print.cgPairedDifferenceComparisonsTable.Rd
cg/man/prepareCGPairedDifferenceData.Rd
cg/man/show.cgPairedDifferenceDescriptiveTable.Rd
cg/man/globalTest.cgOneFactorFit.Rd
cg/man/samplesizeGraph.cgOneFactorSampleSizeTable.Rd
cg/man/print.cgOneFactorDescriptiveTable.Rd
cg/man/errorbargraph.Rd
cg/man/show.cgPairedDifferenceVarianceTable.Rd
cg/man/varianceTable.cgPairedDifferenceFit.Rd
cg/man/comparisons.Rd
cg/man/summary.cgPairedDifferenceFit.Rd
cg/man/cg-package.Rd
cg/man/gmcsfcens.Rd
cg/man/print.cgOneFactorDownweightedTable.Rd
cg/man/boxplot.cgOneFactorData.Rd
cg/man/downweightedTable.cgOneFactorFit.Rd
cg/man/correlationTable.Rd
cg/man/samplesizeTable.Rd
cg/man/descriptiveTable.cgPairedDifferenceData.Rd
cg/man/pointGraph.Rd
cg/man/show.cgOneFactorDescriptiveTable.Rd
cg/man/print.cgPairedDifferenceFit.Rd
cg/man/samplesizeTable.cgPairedDifferenceFit.Rd
cg/man/show.cgPairedDifferenceSampleSizeTable.Rd
cg/man/show.cgOneFactorGlobalTest.Rd
cg/man/comparisonsGraph.cgOneFactorComparisonsTable.Rd
cg/man/varianceTable.Rd
cg/man/descriptiveTable.cgOneFactorData.Rd
cg/man/show.cgOneFactorSampleSizeTable.Rd
cg/man/pointGraph.cgOneFactorData.Rd
cg/man/qqGraph.cgOneFactorFit.Rd
cg/man/showObj.Rd
cg/man/print.cgOneFactorComparisonsTable.Rd
cg/man/show.cgPairedDifferenceComparisonsTable.Rd
cg/man/comparisonsGraph.cgPairedDifferenceComparisonsTable.Rd
cg/man/comparisonsTable.cgPairedDifferenceFit.Rd
cg/man/diffGraph.cgPairedDifferenceData.Rd
cg/man/samplesizeGraph.Rd
cg/man/kmGraph.cgOneFactorData.Rd
cg/man/cgInternalClasses.Rd
cg/man/errorBarGraph.cgOneFactorFit.Rd
cg/man/show.cgOneFactorComparisonsTable.Rd
cg/man/print.cgOneFactorSampleSizeTable.Rd
cg/man/print.cgPairedDifferenceSampleSizeTable.Rd
cg/man/print.cgPairedDifferenceCorrelationTable.Rd
cg/man/show.cgPairedDifferenceCorrelationTable.Rd
cg/man/cgLineColors.Rd
cg/man/prepare.Rd
cg/man/comparisonsTable.Rd
cg/man/print.cgOneFactorGrpSummaryTable.Rd
cg/man/varianceGraph.cgOneFactorFit.Rd
cg/man/show.cgOneFactorDownweightedTable.Rd
cg/man/downweightedTable.cgPairedDifferenceFit.Rd
cg/man/print.cgOneFactorGlobalTest.Rd
cg/man/show.cgPairedDifferenceDownweightedTable.Rd
cg/man/summary.cgOneFactorFit.Rd
cg/man/canine.Rd
cg/man/fit.cgPairedDifferenceData.Rd
cg/man/profileGraph.Rd
cg/man/profileGraph.cgPairedDifferenceData.Rd
cg/man/canine.listfmt.Rd
cg/man/fit.cgOneFactorData.Rd
cg/man/globalTest.Rd
cg/man/print.cgOneFactorFit.Rd
cg/man/samplesizeGraph.cgPairedDifferenceSampleSizeTable.Rd
cg/man/print.cgPairedDifferenceDescriptiveTable.Rd
cg/man/comparisonsTable.cgOneFactorFit.Rd
cg/man/varianceGraph.Rd
cg/man/grpSummaryTable.Rd
cg/man/showObj.cgPairedDifferenceFit.Rd
cg/man/qqGraph.cgPairedDifferenceFit.Rd
cg/man/comparisonsgraph.Rd
cg/man/prepareCGOneFactorData.Rd
cg/man/show.cgOneFactorGrpSummaryTable.Rd
cg/man/comparisonsGraphGeneric.Rd
cg/man/print.cgPairedDifferenceVarianceTable.Rd
cg/man/errorBarGraphGeneric.Rd
cg/man/descriptiveTable.Rd
cg/man/kmGraph.Rd
cg/man/qqGraph.Rd
cg/man/grpSummaryTable.cgOneFactorFit.Rd
cg/man/anorexiaFT.Rd
cg/man/showObj.cgOneFactorFit.Rd
cg/man/samplesizeTable.cgOneFactorFit.Rd
cg/man/downweightedTable.Rd
cg/man/gmcsfcens.listfmt.Rd