cghRA.copies-class: Class '"cghRA.copies"'

In cghRA: Array CGH Data Analysis and Visualization

Description

This class is derived from cghRA.regions, whose model.apply method is the commonest way to obtain cghRA.copies objects.

Extends

Class cghRA.regions, directly.
Class track.table, by class cghRA.regions, distance 2.
Class refTable, by class cghRA.regions, distance 3.
Class crossable, by class cghRA.regions, distance 3.
Class sliceable, by class cghRA.regions, distance 4.
Class drawable, by class cghRA.regions, distance 5.

All reference classes extend and inherit methods from envRefClass.

Fields

The following fields are inherited (from the corresponding class):

• assembly (track.table)

• checktrack (track.table)

• colCount (refTable)

• colIterator (refTable)

• colNames (refTable)

• colReferences (refTable)

• index (track.table)

• model (cghRA.regions)

• modelizeCall (cghRA.regions)

• name (drawable)

• organism (track.table)

• parameters (drawable)

• rowCount (refTable)

• rowNamed (refTable)

• rowNames (refTable)

• segmentCall (cghRA.regions)

• sizetrack (track.table)

• subtrack (track.table)

• values (refTable)

Methods

The following methods are inherited (from the corresponding class):

• addArms (track.table)

• addColumn (track.table)

• addDataFrame (refTable)

• addEmptyRows (refTable)

• addList (track.table)

• addVectors (refTable)

• buildCalls (track.table)

• buildGroupPosition (track.table)

• buildGroupSize (track.table)

• buildIndex (track.table)

• callParams (drawable)

• callSuper (envRefClass)

• check (cghRA.regions, overloaded)

• chromosomes (track.table)

• coerce (track.table)

• colOrder (refTable)

• copy (refTable)

• cross (crossable)

• defaultParams (cghRA.regions, overloaded)

• delColumns (track.table)

• draw (sliceable)

• erase (refTable)

• eraseArms (track.table)

• export (envRefClass)

• extract (refTable)

• field (envRefClass)

• fill (track.table)

• fillGaps (cghRA.regions)

• fix.param (drawable)

• getChromEnd (track.table)

• getClass (envRefClass)

• getColCount (refTable)

• getColNames (refTable)

• getLevels (refTable)

• getName (drawable)

• getParam (drawable)

• getRefClass (envRefClass)

• getRowCount (refTable)

• getRowNames (refTable)

• import (envRefClass)

• indexes (refTable)

• initFields (envRefClass)

• initialize (cghRA.regions)

• isArmed (track.table)

• karyotype (cghRA.regions)

• metaFields (track.table)

• model.apply (cghRA.regions)

• model.auto (cghRA.regions)

• modelized (cghRA.regions)

• model.test (cghRA.regions)

• proportions (cghRA.regions)

• rowOrder (track.table)

• segMerge (track.table)

• segOverlap (track.table)

• setColNames (track.table)

• setLevels (track.table)

• setName (drawable)

• setParam (drawable)

• setRowNames (refTable)

• show (cghRA.regions, overloaded)

• size (track.table)

• slice (track.table)

• status (cghRA.regions)

• trace (envRefClass)

• types (refTable)

• untrace (envRefClass)

• usingMethods (envRefClass)

Author(s)

Sylvain Mareschal

See Also

cghRA.regions-class

cghRA documentation built on May 2, 2019, 3:34 a.m.