Description Usage Arguments Value Author(s) References See Also
This function constructs track.CNV
objects from free annotation files provided by the Database of Genomic Variants.
It is designed to parse supporting variants, as opposed to track.CNV.DGV
provided by Rgb which is designed to parse DGV Variants.
1 | track.CNV.DGVsupp(file, name = "DGV CNV (supporting variants)", quiet = FALSE, ...)
|
file |
Single character value, the path to the raw file to parse. See the 'References' section below. |
name |
Single character value, the |
quiet |
Single logical value, whether to print diagnostic |
... |
Further arguments are passed to the class constructor, as a result most of the handled arguments are |
Return a track.CNV
object.
Sylvain Mareschal
Example of raw file (human assembly 'hg19') : http://dgv.tcag.ca/dgv/docs/GRCh37_hg19_supportingvariants_2014-10-16.txt
track.table-class
, track.CNV-class
, track.CNV.DGV
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