Files in cinaR
A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/prep_scATAC_seurat.R
R/visualization_functions.R
R/prep_scATAC.R
R/example-data.R
R/enrichment_functions.R
R/zzz.R
R/cinaR.R
R/color_values.R
R/utils.R
inst/CITATION
inst/doc/cinaR.Rmd
inst/doc/cinaR.html
inst/doc/cinaR.R
build/vignette.rds
vignettes/cinaR.Rmd
data/grch37.rda
data/grch38.rda
data/VP2008.rda
data/atac_seq_consensus_bm.rda
data/grcm38.rda
man/grcm38.Rd
man/normalizeConsensus.Rd
man/cinaR.Rd
man/heatmap_var_peaks.Rd
man/heatmap_differential.Rd
man/vp2008.Rd
man/bed.Rd
man/run_enrichment.Rd
man/pca_plot.Rd
man/scale_rows.Rd
man/annotatePeaks.Rd
man/color_values.Rd
man/grch37.Rd
man/grch38.Rd
man/GSEA.Rd
man/filterConsensus.Rd
man/verboseFn.Rd
man/differentialAnalyses.Rd
man/HPEA.Rd
man/prep_scATAC_cinaR.Rd
man/show_comparisons.Rd
man/prep_scATAC_seurat.Rd
man/dot_plot.Rd
man/figures/unnamed-chunk-6-1.png
man/figures/unnamed-chunk-3-1.png
man/figures/unnamed-chunk-4-1.png
man/figures/cinaR.png
man/figures/unnamed-chunk-5-1.png
man/figures/overview@5x.png
