API for conStruct
Models Spatially Continuous and Discrete Population Genetic Structure
| Global functions | |
|---|---|
| .onLoad | Source code |
| calc.covariance | Source code |
| calc.lnl.x.MCMC | Source code |
| calculate.laycon.k | Source code |
| calculate.layer.contribution | Man page Source code |
| calculate.qij | Source code |
| calculate.weighted.qij | Source code |
| check.K.arg | Source code |
| check.call | Source code |
| check.coords.arg | Source code |
| check.data.partitions.arg | Source code |
| check.data.partitions.covmats | Source code |
| check.for.files | Source code |
| check.freqs.arg | Source code |
| check.genetic.data.arg | Source code |
| check.geoDist.arg | Source code |
| check.parallel.args | Source code |
| check.spatial.arg | Source code |
| check.xval.call | Source code |
| compare.two.runs | Man page Source code |
| conStruct | Man page Source code |
| conStruct-package | Man page |
| conStruct.data | Man page |
| data.block | Man page |
| drop.invars | Source code |
| drop.missing | Source code |
| end.parallelization | Source code |
| fit.to.test | Source code |
| frob.mn | Source code |
| get.MAP.iter | Source code |
| get.admix.props | Source code |
| get.alpha.params | Source code |
| get.conStruct.chain.results | Source code |
| get.conStruct.results | Source code |
| get.counted.allele | Source code |
| get.cov.function | Source code |
| get.freqs | Source code |
| get.freqs.onerowperind | Source code |
| get.freqs.tworowperind | Source code |
| get.gamma | Source code |
| get.layer.cov | Source code |
| get.layer.params | Source code |
| get.layer.params.list | Source code |
| get.layer.phi | Source code |
| get.n.iter | Source code |
| get.nuggets | Source code |
| get.null.alpha.params | Source code |
| get.null.phi | Source code |
| get.par.cov | Source code |
| get.par.cov.CI | Source code |
| get.sample.names | Source code |
| get.var.mean.freqs | Source code |
| get.xval.CIs | Source code |
| get.ylim | Source code |
| identify.invar.sites | Source code |
| identify.missing.sites | Source code |
| index.MAP | Source code |
| index.MAP.layer.params | Source code |
| index.MAP.layer.params.list | Source code |
| log.likelihood | Source code |
| make.admix.pie.plot | Man page Source code |
| make.all.chain.coplots | Source code |
| make.all.chain.plots | Source code |
| make.all.the.plots | Man page Source code |
| make.conStruct.results.S3 | Source code |
| make.data.block | Source code |
| make.data.block.S3 | Source code |
| make.data.partitions | Source code |
| make.freq.data.list.S3 | Source code |
| make.layer.params.S3 | Source code |
| make.structure.plot | Man page Source code |
| make.structure.polygon.layer | Source code |
| match.layers.x.runs | Man page Source code |
| measure.frob.similarity | Source code |
| parallel.prespecify.check | Source code |
| parallelizing | Source code |
| pick.stan.model | Source code |
| plot.admix.props | Source code |
| plot.gamma | Source code |
| plot.layer.cov.params | Source code |
| plot.layer.covariances | Source code |
| plot.layer.param | Source code |
| plot.lpd | Source code |
| plot.model.fit.CIs | Source code |
| plot.nuggets | Source code |
| pos.def.check | Source code |
| post.process.par.cov | Source code |
| print.conStruct.results | Man page Source code |
| print.data.block | Man page Source code |
| print.freq.data | Man page Source code |
| print.layer.params | Man page Source code |
| process.freq.data | Source code |
| standardize.distances | Source code |
| standardize.xvals | Source code |
| structure.polygon | Source code |
| structure2conStruct | Man page Source code |
| unstandardize.distances | Source code |
| validate.data.block | Source code |
| validate.data.list | Source code |
| validate.model | Source code |
| validate.n.samples | Source code |
| write.xvals | Source code |
| x.validation | Man page Source code |
| x.validation.rep | Source code |
| xval.make.data.block | Source code |
| xval.process.data | Source code |
