inst/doc/confidence.R

## ----ini, echo=FALSE, results='hide', message=FALSE----------------------
library(confidence)
library(knitr)
library(xtable)

## ----echo=FALSE----------------------------------------------------------
opts_chunk$set(
    comment = NA,
    quiet = TRUE,
    progress = FALSE,
    tidy = FALSE,
    cache = FALSE,
    message = FALSE,
    error = TRUE,
    warning = TRUE
)

## ----echo=FALSE----------------------------------------------------------
rversion <- sub(
    pattern = "R *\\(>= *([^)]*)\\).*", 
    replacement = "\\1", 
    x = packageDescription("confidence", fields = "Depends")
)

## ----eval=FALSE, echo=TRUE-----------------------------------------------
#  library(confidence)

## ----results='asis', echo=FALSE------------------------------------------
data(metal)
metal$sampdev <- NULL
metal$char <- NULL
metal$comp <- NULL
print(
    xtable(x = metal), 
    include.rownames = FALSE,
    size = "footnotesize",
    add.to.row = list(list(-1), "\\rowcolor{blue!15}")
)

## ----eval=FALSE, prompt=TRUE---------------------------------------------
#  conf()

## ----eval=FALSE----------------------------------------------------------
#  "my_directory/my_input_file.csv"

## ----eval=FALSE----------------------------------------------------------
#  "my_directory/outputYYYYmmddHHMMSS/output.csv"
#  "my_directory/outputYYYYmmddHHMMSS/output.html"

## ----eval=FALSE, prompt=TRUE---------------------------------------------
#  conf("my_directory/my_input_file.csv")

## ----eval=FALSE, prompt=TRUE---------------------------------------------
#  for (filename in filenames) {
#      conf(filename)
#  }

## ----eval=FALSE, prompt=TRUE---------------------------------------------
#  conf(my_data.frame)

## ----results='asis', echo=FALSE------------------------------------------
data(DCA)
print(
    xtable(x = DCA), 
    include.rownames = FALSE,
    size = "footnotesize",
    add.to.row = list(list(-1), "\\rowcolor{blue!15}")
)

## ----results='asis', echo=FALSE------------------------------------------
x <- mya(conf_input(x=DCA))
print(
    xtable(x = as.data.frame(x)), 
    include.rownames = FALSE,
    size = "footnotesize",
    add.to.row = list(list(-1), "\\rowcolor{blue!15}")
)

## ----dev='pdf',fig.width=7, fig.height=4, out.width='0.8\\textwidth', echo=FALSE----
plot(x)

## ----prompt=TRUE---------------------------------------------------------

# load confidence package
# Note: this has to be done only once, at the start of an R session
library(confidence)

# load ecological quality ratio's
data(EQR)

# print these data to the screen
EQR

Try the confidence package in your browser

Any scripts or data that you put into this service are public.

confidence documentation built on May 2, 2019, 1:06 p.m.