Nothing
## ----ini, echo=FALSE, results='hide', message=FALSE----------------------
library(confidence)
library(knitr)
library(xtable)
## ----echo=FALSE----------------------------------------------------------
opts_chunk$set(
comment = NA,
quiet = TRUE,
progress = FALSE,
tidy = FALSE,
cache = FALSE,
message = FALSE,
error = TRUE,
warning = TRUE
)
## ----echo=FALSE----------------------------------------------------------
rversion <- sub(
pattern = "R *\\(>= *([^)]*)\\).*",
replacement = "\\1",
x = packageDescription("confidence", fields = "Depends")
)
## ----eval=FALSE, echo=TRUE-----------------------------------------------
# library(confidence)
## ----results='asis', echo=FALSE------------------------------------------
data(metal)
metal$sampdev <- NULL
metal$char <- NULL
metal$comp <- NULL
print(
xtable(x = metal),
include.rownames = FALSE,
size = "footnotesize",
add.to.row = list(list(-1), "\\rowcolor{blue!15}")
)
## ----eval=FALSE, prompt=TRUE---------------------------------------------
# conf()
## ----eval=FALSE----------------------------------------------------------
# "my_directory/my_input_file.csv"
## ----eval=FALSE----------------------------------------------------------
# "my_directory/outputYYYYmmddHHMMSS/output.csv"
# "my_directory/outputYYYYmmddHHMMSS/output.html"
## ----eval=FALSE, prompt=TRUE---------------------------------------------
# conf("my_directory/my_input_file.csv")
## ----eval=FALSE, prompt=TRUE---------------------------------------------
# for (filename in filenames) {
# conf(filename)
# }
## ----eval=FALSE, prompt=TRUE---------------------------------------------
# conf(my_data.frame)
## ----results='asis', echo=FALSE------------------------------------------
data(DCA)
print(
xtable(x = DCA),
include.rownames = FALSE,
size = "footnotesize",
add.to.row = list(list(-1), "\\rowcolor{blue!15}")
)
## ----results='asis', echo=FALSE------------------------------------------
x <- mya(conf_input(x=DCA))
print(
xtable(x = as.data.frame(x)),
include.rownames = FALSE,
size = "footnotesize",
add.to.row = list(list(-1), "\\rowcolor{blue!15}")
)
## ----dev='pdf',fig.width=7, fig.height=4, out.width='0.8\\textwidth', echo=FALSE----
plot(x)
## ----prompt=TRUE---------------------------------------------------------
# load confidence package
# Note: this has to be done only once, at the start of an R session
library(confidence)
# load ecological quality ratio's
data(EQR)
# print these data to the screen
EQR
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