cop_cmdscale: PCOPS version of strain
In cops: Cluster Optimized Proximity Scaling

cop_cmdscale

R Documentation

PCOPS version of strain

Description

The free parameter is lambda for power transformations of the observed proximities.

Usage

cop_cmdscale(
  dis,
  theta = c(1, 1, 1),
  weightmat = NULL,
  ndim = 2,
  init = NULL,
  itmaxi = 1000,
  ...,
  stressweight = 1,
  cordweight = 0.5,
  q = 1,
  minpts = ndim + 1,
  epsilon = 10,
  rang = NULL,
  verbose = 0,
  scale = "sd",
  normed = TRUE,
  stresstype = "default"
)

Arguments

`dis`	numeric matrix or dist object of a matrix of proximities
`theta`	the theta vector of powers; this must be a scalar of the lambda transformation for the observed proximities.
`weightmat`	(optional) a matrix of nonnegative weights
`ndim`	number of dimensions of the target space
`init`	(optional) initial configuration
`itmaxi`	number of iterations. No effect here.
`...`	additional arguments to be passed to the fitting procedure
`stressweight`	weight to be used for the fit measure; defaults to 1
`cordweight`	weight to be used for the cordillera; defaults to 0.5
`q`	the norm of the corrdillera; defaults to 1
`minpts`	the minimum points to make up a cluster in OPTICS; defaults to ndim+1
`epsilon`	the epsilon parameter of OPTICS, the neighbourhood that is checked; defaults to 10
`rang`	range of the distances (min distance minus max distance). If NULL (default) the cordillera will be normed to each configuration's maximum distance, so an absolute value of goodness-of-clusteredness.
`verbose`	numeric value hat prints information on the fitting process; >2 is extremely verbose
`scale`	should the configuration be scale adjusted
`normed`	should the cordillera be normed; defaults to TRUE
`stresstype`	which stress to report. Only takes cmdscales default stress currrently.