cop_powerelastic: PCOPS version of elastic scaling with powers

In cops: Cluster Optimized Proximity Scaling

PCOPS version of elastic scaling with powers

Description

PCOPS version of elastic scaling with powers

Usage

cop_powerelastic(
  dis,
  theta = c(1, 1),
  type = "ratio",
  weightmat = 1 - diag(nrow(dis)),
  init = NULL,
  ndim = 2,
  itmaxi = 10000,
  ...,
  stressweight = 1,
  cordweight = 0.5,
  q = 1,
  minpts = ndim + 1,
  epsilon = 10,
  rang = NULL,
  verbose = 0,
  scale = "sd",
  normed = TRUE
)

Arguments

dis	numeric matrix or dist object of a matrix of proximities
theta	the theta vector of powers; a vector of length two where the first element is kappa (for the fitted distances), the second lambda (for the observed proximities). If a scalar for the free parameters is given it is recycled. Defaults to 1 1.
type	MDS type. Defaults to "ratio".
weightmat	(optional) a matrix of nonnegative weights
init	(optional) initial configuration
ndim	number of dimensions of the target space
itmaxi	number of iterations. default is 10000.
...	additional arguments to be passed to the fitting procedure
stressweight	weight to be used for the fit measure; defaults to 1
cordweight	weight to be used for the cordillera; defaults to 0.5
q	the norm of the cordillera; defaults to 1
minpts	the minimum points to make up a cluster in OPTICS; defaults to ndim+1
epsilon	the epsilon parameter of OPTICS, the neighbourhood that is checked; defaults to 10
rang	range of the distances (min distance minus max distance). If NULL (default) the cordillera will be normed to each configuration's maximum distance, so an absolute value of goodness-of-clusteredness.
verbose	numeric value hat prints information on the fitting process; >2 is extremely verbose
scale	should the configuration be scale adjusted
normed	should the cordillera be normed; defaults to TRUE

Value

A list with the components

• stress: the stress-1 value (sqrt(stress.m))

• stress.m: default normalized stress

• copstress: the weighted loss value

• OC: the OPTICScordillera value

• parameters: the parameters used for fitting (kappa, lambda)

• fit: the returned object of the fitting procedure

• cordillera: the cordillera object

cops documentation built on Sept. 30, 2024, 9:22 a.m.