cop_rstress: PCOPS version of rstress

Description Usage Arguments Value

View source: R/cops.R

Description

PCOPS version of rstress

Usage

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cop_rstress(
  dis,
  theta = c(1, 1, 1),
  weightmat = 1 - diag(nrow(dis)),
  init = NULL,
  ndim = 2,
  itmaxi = 10000,
  ...,
  stressweight = 1,
  cordweight = 0.5,
  q = 1,
  minpts = ndim + 1,
  epsilon = 10,
  rang = NULL,
  verbose = 0,
  scale = "sd",
  normed = TRUE,
  stresstype = c("default", "stress1", "rawstress", "normstress", "enormstress",
    "enormstress1")
)

Arguments

dis

numeric matrix or dist object of a matrix of proximities

theta

the theta vector of powers; this is either a scalar of the kappa transformation for the fitted distances proximities, or a vector where the first is the kappa argument for the fitted distances and the second the lambda argument, the third the nu argument (here internally fixed to 1). Defaults to 1 1 1

weightmat

(optional) a matrix of nonnegative weights

init

(optional) initial configuration

ndim

number of dimensions of the target space

itmaxi

number of iterations. default is 10000.

...

additional arguments to be passed to the fitting procedure

stressweight

weight to be used for the fit measure; defaults to 1

cordweight

weight to be used for the cordillera; defaults to 0.5

q

the norm of the cordillera; defaults to 1

minpts

the minimum points to make up a cluster in OPTICS; defaults to ndim+1

epsilon

the epsilon parameter of OPTICS, the neighbourhood that is checked; defaults to 10

rang

range of the distances (min distance minus max distance). If NULL (default) the cordillera will be normed to each configuration's maximum distance, so an absolute value of goodness-of-clusteredness.

verbose

numeric value hat prints information on the fitting process; >2 is extremely verbose

scale

should the configuration be scale adjusted

normed

should the cordillera be normed; defaults to TRUE

stresstype

which stress to report? Defaults to explicitly normed stress

Value

A list with the components


cops documentation built on March 24, 2021, 1:06 a.m.