Frequently used methods in genomic applications with emphasis on parallel computing (OpenMP). At its core, the package has a Gibbs Sampler that allows running univariate linear mixed models that have both, sparse and dense design matrices. The parallel sampling method in case of dense design matrices (e.g. Genotypes) allows running Ridge Regression or BayesA for a very large number of individuals. The Gibbs Sampler is capable of running Single Step Genomic Prediction models. In addition, the package offers parallelized functions for common tasks like genomewide association studies and cross validation in a memory efficient way.
Package details 


Author  Claas Heuer 
Maintainer  Claas Heuer <cheuer@tierzucht.unikiel.de> 
License  GPL (>= 2) 
Version  0.1 
URL  https://github.com/cheuerde/cpgen 
Package repository  View on CRAN 
Installation 
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