Parallelized Genomic Prediction and GWAS

ccolmv | Colwise means or variances |

ccov | ccov |

ccross | ccross |

cCV | Generate phenotype vectors for cross validation |

cGBLUP | Genomic BLUP |

cgrm | Genomic Relationship Matrices |

cgrm.A | Additive Genomic Relationship Matrix |

cgrm.D | Dominance Genomic Relationship Matrix |

cGWAS | Genomewide Association Study |

cGWAS.emmax | Genomewide Association Study - EMMAX |

check_openmp | Check OpenMP-support. |

clmm | Linear Mixed Models using Gibbs Sampling |

cmaf | cmaf |

cpgen-package | cpgen - Parallel genomic evaluations |

cpgen-parallel | Multithreading using 'cpgen' |

cpowop | Square matrix power operator |

crossprodop | (Parallel) Matrix product operator |

cscale_inplace | cscale_inplace |

cscanx | Read in a matrix from a file |

csolve | csolve |

cSSBR | Single Step Bayesian Regression |

cSSBR.setup | Preparing Model terms for Single Step Bayesian Regression |

get_cor | Compute the prediction accuracy from Cross Validition |

get_max_threads | Get the maximum number of threads available |

get_num_threads | Get the number of threads for 'cpgen' |

get_pred | Extract predictions vectors of an object returned by 'clmm'... |

rand_data | Generate random data for test purposes |

set_num_threads | Set the number of OpenMP threads used by the functions of... |

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