ctsem: Continuous Time Structural Equation Modelling

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A multivariate continuous (and discrete) time dynamic modelling package for panel and time series data, using linear stochastic differential equations. Contains a faster frequentist set of functions using OpenMx for single subject and mixed-effects (random intercepts only) structural equation models, or a hierarchical Bayesian implementation using Stan that allows for random effects over all model parameters. Allows for modelling of multiple noisy measurements of multiple stochastic processes, time varying input / event covariates, and time invariant covariates used to predict the parameters.

Author
Charles Driver [aut, cre, cph], Manuel Voelkle [aut, cph], Han Oud [aut, cph]
Date of publication
2016-11-19 14:30:35
Maintainer
Charles Driver <driver@mpib-berlin.mpg.de>
License
GPL-3
Version
2.0.0
URLs

View on CRAN

Man pages

AnomAuth
AnomAuth
ctCI
ctCI Computes confidence intervals on specified parameters /...
ctCollapse
ctCollapse Easily collapse an array margin using a specified...
ctCompareExpected
ctCompareExpected Compares model implied to observed means...
ctDeintervalise
ctDeintervalise
ctDensity
ctDensity
ctDiscretePars
ctDiscretePars
ctExample1
ctExample1
ctExample1TIpred
ctExample1TIpred
ctExample2
ctExample2
ctExample2level
ctExample2level
ctExample3
ctExample3
ctExample4
ctExample4
ctFit
Fit a ctsem object
ctGenerate
ctGenerate
ctIndplot
ctIndplot
ctIntervalise
Converts absolute times to intervals for wide format ctsem...
ctKalman
ctKalman
ctLongToWide
ctLongToWide Restructures time series / panel data from long...
ctModel
Define a ctsem model
ctMultigroupFit
Fits a multiple group continuous time model.
ctPlot
singlePlot
ctPSMfit
ctPSMfit
ctRefineTo
ctRefineTo
ctsem
ctsem
ctStanContinuousPars
ctStanContinuousPars
ctStanDiscretePars
ctStanDiscretePars
ctStanDiscreteParsPlot
ctStanDiscreteParsPlot
ctStanFit
ctStanFit
ctStanKalman
ctStanKalman
ctStanKalmanPlot
ctStanKalmanPlot
ctStanParnames
ctStanParnames
ctStanPlotPost
ctStanPlotPost
ctstantestdat
ctstantestdat
ctstantestfit
ctstantestfit
ctWideNames
ctWideNames sets default column names for wide ctsem...
ctWideToLong
ctWideToLong Convert ctsem wide to long format
datastructure
datastructure
longexample
longexample
Oscillating
Oscillating
plot.ctsemFit
Plotting function for object class ctsemFit
plot.ctsemMultigroupFit
Plot function for ctsemMultigroupFit object
plot.ctStanFit
plot.ctStanFit
plot.ctStanModel
Prior plotting
sdpcor2cov
sdcor2cov
summary.ctsemFit
Summary function for ctsemFit object
summary.ctsemMultigroupFit
Summary function for ctsemMultigroupFit object
summary.ctStanFit
summary.ctStanFit

Files in this package

ctsem
ctsem/inst
ctsem/inst/CITATION
ctsem/inst/doc
ctsem/inst/doc/ctsem.R
ctsem/inst/doc/ctsem.rnw
ctsem/inst/doc/hierarchical.R
ctsem/inst/doc/hierarchical.rnw
ctsem/inst/doc/hierarchical.pdf
ctsem/inst/doc/ctsem.pdf
ctsem/tests
ctsem/tests/testthat
ctsem/tests/testthat/test-reshaping.R
ctsem/tests/testthat/test-knownFits.R
ctsem/tests/testthat/test-intervalise.R
ctsem/tests/testthat/test-objectiveEquiv.R
ctsem/tests/testthat/ctStanFitTests.R
ctsem/NAMESPACE
ctsem/NEWS
ctsem/data
ctsem/data/longexample.rda
ctsem/data/ctstantestdat.rda
ctsem/data/AnomAuth.rda
ctsem/data/ctExample1.rda
ctsem/data/ctExample1TIpred.rda
ctsem/data/ctstantestfit.rda
ctsem/data/Oscillating.rda
ctsem/data/ctExample2.rda
ctsem/data/ctExample4.rda
ctsem/data/ctExample3.rda
ctsem/data/datastructure.rda
ctsem/R
ctsem/R/ctsem.R
ctsem/R/ctDeintervalise.R
ctsem/R/ctDataHelp.R
ctsem/R/ctStanKalman.R
ctsem/R/ctPSMfit.R
ctsem/R/ctLongtowide.r
ctsem/R/ctModel.R
ctsem/R/ctWideToLong.R
ctsem/R/ctStanModel.R
ctsem/R/plot.ctStanFit.R
ctsem/R/ctDiscretePars.R
ctsem/R/plot.ctsemFit.R
ctsem/R/ctRefineTo.R
ctsem/R/summary.ctsemFit.R
ctsem/R/plot.ctStanModel.R
ctsem/R/ctsemUtils.R
ctsem/R/ctCompareExpectation.R
ctsem/R/ctStanPlotPost.R
ctsem/R/sdpcor2cov.R
ctsem/R/ctIntervalise.R
ctsem/R/ctLabel.R
ctsem/R/ctCI.R
ctsem/R/ctStanSummary.R
ctsem/R/ctKalman.R
ctsem/R/ctFit.R
ctsem/R/ctGenerate.R
ctsem/R/ctStanFit.R
ctsem/R/ctIndplot.R
ctsem/R/ctMultigroupFit.R
ctsem/vignettes
ctsem/vignettes/ctsem.rnw
ctsem/vignettes/pathdiagramtwoprocessbasic.pdf
ctsem/vignettes/hierarchical.rnw
ctsem/vignettes/pathdiagramdiscretecomparison.png
ctsem/vignettes/hierarchicalreferences.bib
ctsem/vignettes/references.bib
ctsem/vignettes/ctsem-blx.bib
ctsem/vignettes/pathdiagramtwoprocessfull2.pdf
ctsem/README.md
ctsem/MD5
ctsem/build
ctsem/build/vignette.rds
ctsem/DESCRIPTION
ctsem/man
ctsem/man/plot.ctStanFit.Rd
ctsem/man/plot.ctStanModel.Rd
ctsem/man/ctPlot.Rd
ctsem/man/ctLongToWide.Rd
ctsem/man/ctStanDiscreteParsPlot.Rd
ctsem/man/ctStanKalman.Rd
ctsem/man/ctStanPlotPost.Rd
ctsem/man/ctstantestfit.Rd
ctsem/man/ctIntervalise.Rd
ctsem/man/ctDeintervalise.Rd
ctsem/man/ctStanDiscretePars.Rd
ctsem/man/ctWideNames.Rd
ctsem/man/ctMultigroupFit.Rd
ctsem/man/plot.ctsemMultigroupFit.Rd
ctsem/man/ctStanContinuousPars.Rd
ctsem/man/ctCI.Rd
ctsem/man/ctFit.Rd
ctsem/man/ctExample2.Rd
ctsem/man/ctKalman.Rd
ctsem/man/sdpcor2cov.Rd
ctsem/man/ctExample2level.Rd
ctsem/man/summary.ctStanFit.Rd
ctsem/man/ctModel.Rd
ctsem/man/ctIndplot.Rd
ctsem/man/ctDensity.Rd
ctsem/man/ctStanParnames.Rd
ctsem/man/ctDiscretePars.Rd
ctsem/man/ctsem.Rd
ctsem/man/ctExample1TIpred.Rd
ctsem/man/ctExample1.Rd
ctsem/man/ctWideToLong.Rd
ctsem/man/summary.ctsemMultigroupFit.Rd
ctsem/man/ctStanKalmanPlot.Rd
ctsem/man/plot.ctsemFit.Rd
ctsem/man/ctGenerate.Rd
ctsem/man/datastructure.Rd
ctsem/man/ctStanFit.Rd
ctsem/man/ctExample4.Rd
ctsem/man/ctCollapse.Rd
ctsem/man/ctstantestdat.Rd
ctsem/man/summary.ctsemFit.Rd
ctsem/man/ctPSMfit.Rd
ctsem/man/ctExample3.Rd
ctsem/man/longexample.Rd
ctsem/man/ctRefineTo.Rd
ctsem/man/ctCompareExpected.Rd
ctsem/man/AnomAuth.Rd
ctsem/man/Oscillating.Rd