Man pages for ctsem
Continuous Time Structural Equation Modelling
| AnomAuth | AnomAuth |
| ctACF | Continuous Time Autocorrelation Function (ctACF) |
| ctACFresiduals | Calculate Continuous Time Autocorrelation Function (ACF) for... |
| ctAddSamples | Sample more values from an optimized ctstanfit object |
| ctCheckFit | Visual model fit diagnostics for ctsem fit objects. |
| ctChisqTest | Chi Square test wrapper for ctStanFit objects. |
| ctCollapse | ctCollapse Easily collapse an array margin using a specified... |
| ctDeintervalise | ctDeintervalise |
| ctDiscretePars | ctDiscretePars |
| ctDiscreteParsPlot | ctDiscreteParsPlot |
| ctDiscretiseData | Discretise long format continuous time (ctsem) data to... |
| ctDocs | Get documentation pdf for ctsem |
| ctEmpiricalBayesFit | Empirical Bayes subject-wise ctsem fits |
| ctExample1 | ctExample1 |
| ctExample1TIpred | ctExample1TIpred |
| ctExample2 | ctExample2 |
| ctExample2level | ctExample2level |
| ctExample3 | ctExample3 |
| ctExample4 | ctExample4 |
| ctExtract | Extract samples from a ctStanFit object |
| ctFit | Fit a ctsem model |
| ctFitCovCheck | Visual lagged covariance or correlation diagnostics for ctsem... |
| ctFitCovCheckPlot | ctFitCovCheckPlot |
| ctFitUpdate | Update a ctStanFit object |
| ctGenerate | ctGenerate |
| ctGenerateFromFit | Add a '$generated' object to ctstanfit object, with random... |
| ctGenerateFromPriors | Generate data from a ctstanmodel object |
| ctIntervalise | Converts absolute times to intervals for wide format ctsem... |
| ctKalman | ctKalman |
| ctKalmanArray | Get Kalman filter estimates from a ctStanFit object |
| ctLongToWide | ctLongToWide Restructures time series / panel data from long... |
| ctLOO | K fold cross validation for ctStanFit objects |
| ctModel | Define a ctsem model |
| ctModelConvertOMX | Convert an old OpenMx-style ctsem model to the modern ctsem... |
| ctModelCoverage_check | Coverage Check Function |
| ctModelHigherOrder | Raise the order of a ctsem type ='omx' model object. |
| ctModelLatex | Generate and optionally compile latex equation of subject... |
| ctModelMatrices | Matrix view for ctStanModel objects |
| ctOptimUncertainty | Update optimized ctsem uncertainty estimates |
| ctPlotArray | Plots three dimensional y values for quantile plots |
| ctPlotPosterior | ctPlotPosterior |
| ctPoly | Plots uncertainty bands with shading |
| ctPostPredData | Create a data.table to compare data generated from a ctsem... |
| ctPostPredict | Compares model implied density and values to observed, for a... |
| ctPostPredPlots | Create diagnostic plots to assess the goodness-of-fit for a... |
| ctPredictTIP | ctPredictTIP |
| ctRawParnames | ctRawParnames |
| ctResiduals | Extract Standardized Residuals from a ctsem Fit |
| ctsem-package | ctsem |
| ctstantestdat | ctstantestdat |
| ctstantestfit | ctstantestfit |
| ctStanUpdModel | Update an already compiled and fit ctStanFit object |
| ctSubjectPars | Extract an array of subject specific parameters from a... |
| ctSummaryMatrices | ctSummaryMatrices |
| ctTIpredEffects | Get time independent predictor effect estimates |
| ctWideNames | ctWideNames sets default column names for wide ctsem... |
| ctWideToLong | ctWideToLong Convert ctsem wide to long format |
| datastructure | datastructure |
| inv_logit | Inverse logit |
| log1p_exp | log1p_exp |
| longexample | longexample |
| Oscillating | Oscillating |
| plotctACF | Plot an approximate continuous-time ACF object from ctACF |
| plot.ctKalmanDF | Plots Kalman filter output from ctKalman. |
| plot.ctStanFit | plot.ctStanFit |
| plot.ctStanModel | Prior plotting |
| sdpcor2cov | sdcor2cov |
| standatact_specificsubjects | Adjust standata from ctsem to only use specific subjects |
| stanoptimis | Optimize / importance sample a stan or ctStan model. |
| stan_reinitsf | Quickly initialise stanfit object from model and data |
| stan_unconstrainsamples | Convert samples from a stanfit object to the unconstrained... |
| stanWplot | Runs stan, and plots sampling information while sampling. |
| summary.ctEmpiricalBayesFit | Summarise empirical Bayes subject-wise ctsem fits |
| summary.ctStanFit | summary.ctStanFit |
| test_isclose | Tests if 2 values are close to each other |
