API for ctsem
Continuous Time Structural Equation Modelling
| Global functions | |
|---|---|
| .onAttach | Source code |
| AnomAuth | Man page |
| Oscillating | Man page |
| T0VARredundancies | Source code |
| TIPREDEFFECTnames | Source code |
| `$.ctStanModel` | Source code |
| `$<-.ctStanModel` | Source code |
| `ctModelMatrices<-` | Source code |
| autoTIpredsFunc | Source code |
| bmatrix | Source code |
| bootstrapHessian | Source code Source code |
| carefulfitFunc | Source code |
| checkTIauto | Source code |
| clusterIDeval | Source code |
| clusterIDexport | Source code |
| constraincorsqrt1 | Source code |
| constraincorsqrt2 | Source code |
| covdata | Source code |
| covml | Source code |
| cseq | Source code |
| ctACF | Man page Source code |
| ctACFpostpred | Source code |
| ctACFquantiles | Source code |
| ctACFresiduals | Man page Source code |
| ctAddSamples | Man page Source code |
| ctCheckFit | Man page |
| ctChisqTest | Man page Source code |
| ctCollapse | Man page Source code |
| ctCompare | Source code |
| ctDeintervalise | Man page Source code |
| ctDensityList | Source code |
| ctDiscretePars | Man page Source code |
| ctDiscreteParsDrift | Source code |
| ctDiscreteParsPlot | Man page Source code |
| ctDiscretiseData | Man page Source code |
| ctDocs | Man page Source code |
| ctEBadjustModel | Source code |
| ctEBbaseTransform | Source code |
| ctEBfitArgsOptimDefaults | Source code |
| ctEBfitSubjects | Source code |
| ctEBfreeRows | Source code |
| ctEBidentityRawMap | Source code |
| ctEBmapRaw | Source code |
| ctEBnum | Source code |
| ctEBpriorRawStats | Source code |
| ctEBprogressReporter | Source code |
| ctEBrawMatrix | Source code |
| ctEBrawParnames | Source code |
| ctEBrawStats | Source code |
| ctEBrobustRaw | Source code |
| ctEBshiftTransform | Source code |
| ctEBtransformedRaw | Source code |
| ctEBtransformedStats | Source code |
| ctEBworkerCall | Source code |
| ctEmpiricalBayesFit | Man page Source code |
| ctExample1 | Man page |
| ctExample1TIpred | Man page |
| ctExample2 | Man page |
| ctExample2level | Man page |
| ctExample3 | Man page |
| ctExample4 | Man page |
| ctExtract | Man page Source code |
| ctFit | Man page Source code |
| ctFitCovCheck | Man page Source code |
| ctFitCovCheckPlot | Man page |
| ctFitUpdate | Man page Source code |
| ctFitgetparnamesfromraw | Source code |
| ctGenerate | Man page Source code |
| ctGenerateFromFit | Man page Source code |
| ctGenerateFromPriors | Man page Source code |
| ctIntervalise | Man page Source code |
| ctJacobian | Source code |
| ctKalman | Man page Source code |
| ctKalmanArray | Man page Source code |
| ctLOO | Man page Source code |
| ctLabel | Source code |
| ctLongToWide | Man page Source code |
| ctMatsetupFreePars | Source code |
| ctModel | Man page Source code |
| ctModel0DRIFT | Source code |
| ctModelBuildPopCov | Source code |
| ctModelBuildTIeffects | Source code |
| ctModelConvertOMX | Man page Source code |
| ctModelCoverage_check | Man page Source code |
| ctModelHigherOrder | Man page Source code |
| ctModelLatex | Man page Source code |
| ctModelMatrices | Man page Source code |
| ctModelMatrices<- | Man page |
| ctModelStatesAndPARS | Source code |
| ctModelTransformsToNum | Source code |
| ctModelUnlist | Source code |
| ctModeltoNumeric | Source code |
| ctOptim | Source code |
| ctOptimBootstrapDraws | Source code |
| ctOptimBootstrapStandata | Source code |
| ctOptimCheckUncertaintyData | Source code |
| ctOptimComputeUncertainty | Source code |
| ctOptimCovFromHessian | Source code |
| ctOptimDataLpgFunc | Source code |
| ctOptimFitLpgFunc | Source code |
| ctOptimFullBootstrapDraws | Source code |
| ctOptimFullBootstrapOne | Source code |
| ctOptimNDataPoints | Source code |
| ctOptimNSubjects | Source code |
| ctOptimNormalDraws | Source code |
| ctOptimSafeCov | Source code |
| ctOptimScoreMatrix | Source code |
| ctOptimSurrogateDesign | Source code |
| ctOptimSurrogateHessian | Source code |
| ctOptimSurrogateScaleUpdate | Source code |
| ctOptimUncertainty | Man page Source code |
| ctOptimUpdateTransformed | Source code |
| ctPlotArray | Man page Source code |
| ctPlotArrayGG | Source code |
| ctPlotPosterior | Man page Source code |
| ctPoly | Man page Source code |
| ctPostPredData | Man page Source code |
| ctPostPredPlots | Man page |
| ctPostPredict | Man page |
| ctPredictTIP | Man page Source code |
| ctRawParnames | Man page Source code |
| ctRawParnamesRaw | Source code |
| ctResiduals | Man page Source code |
| ctStanCalcsList | Source code |
| ctStanContinuousPars | Man page |
| ctStanData | Source code |
| ctStanDiscretePars | Man page |
| ctStanDiscreteParsPlot | Man page |
| ctStanFit | Man page |
| ctStanFitUpdate | Man page |
| ctStanGenerate | Man page |
| ctStanGenerateFromFit | Man page |
| ctStanKalman | Man page |
| ctStanMatricesList | Source code |
| ctStanModel | Man page |
| ctStanModelCleanctspec | Source code |
| ctStanModelDefaultFreePar | Source code |
| ctStanModelIntOverPop | Source code |
| ctStanModelMatrices | Source code |
| ctStanModelMatricesPlaceholder | Source code |
| ctStanModelMatrixValue | Source code |
| ctStanModelUpdateParsFromMatrices | Source code |
| ctStanModelWriter | Source code |
| ctStanParMatrices | Source code |
| ctStanParnames | Man page |
| ctStanPlot | Man page |
| ctStanPlotPost | Man page |
| ctStanPostPredict | Man page |
| ctStanRawSamples | Source code |
| ctStanSubjectPars | Man page |
| ctStanTIpredeffects | Man page |
| ctStanUpdModel | Man page Source code |
| ctSubjectPars | Man page Source code |
| ctSummarise | Source code |
| ctSummaryMatrices | Man page Source code |
| ctTIauto | Source code |
| ctTIpredEffects | Man page Source code |
| ctTIpredParMats | Source code |
| ctWideNames | Man page Source code |
| ctWideToLong | Man page Source code |
| ctdataupdate | Source code |
| ctsem | Man page |
| ctsem-package | Man page |
| ctsmupdate | Source code |
| ctstantestdat | Man page |
| ctstantestfit | Man page |
| ctstantestfitfunc | Source code |
| datastructure | Man page |
| expmGetSubsets | Source code |
| extract | Man page |
| fAstd | Source code |
| fAstd2 | Source code |
| fQinf | Source code |
| fdtA | Source code |
| fdtAstd | Source code |
| fdtQ | Source code |
| fdtQe | Source code |
| fdtb | Source code |
| flexlapply | Source code |
| flexlapplytext | Source code |
| flexsapply | Source code |
| getcxxfun | Source code |
| getparnames | Source code |
| handleGroupParstepsAutoModel | Source code |
| handleParstepsAutoModel | Source code |
| imis_is | Source code |
| indexMatrix | Source code |
| inv_logit | Man page Source code |
| listOfMatrices | Source code |
| llsurface | Source code |
| llsurfacePlot | Source code |
| log1p_exp | Man page Source code |
| logit | Source code |
| longexample | Man page |
| makeClusterID | Source code |
| makeNumericIDs | Source code |
| meltkalman | Source code |
| naf | Source code |
| numericHessianFunc | Source code |
| openPDF | Source code |
| parallelStanSetup | Source code |
| plot.ctKalmanDF | Man page Source code |
| plot.ctStanFit | Man page Source code |
| plot.ctStanModel | Man page Source code |
| plotctACF | Man page Source code |
| plotdensity2dby2 | Source code |
| popcovnames | Source code |
| print.summary.ctEmpiricalBayesFit | Source code |
| priorchecker | Source code |
| priorcheckreport | Source code |
| processHessianMatrices | Source code |
| relistarrays | Source code |
| rl | Source code |
| scorecalc | Source code |
| sdpcor2cov | Man page Source code |
| sgd | Source code |
| simpleStateCheck | Source code |
| simplifystanfunction | Source code |
| singlecoreStanSetup | Source code |
| stanWplot | Man page Source code |
| stan_constrainsamples | Source code |
| stan_reinitsf | Man page Source code |
| stan_unconstrainsamples | Man page Source code |
| standataFillTime | Source code |
| standatact_specificsubjects | Man page Source code |
| standatalongobjects | Source code |
| standatalongremerge | Source code |
| standatatolong | Source code |
| stanoptimis | Man page Source code |
| summary.ctEmpiricalBayesFit | Man page Source code |
| summary.ctStanFit | Man page Source code |
| suppressOutput | Source code |
| test_isclose | Man page Source code |
| testall | Source code |
| texPrep | Source code |
| tform | Source code |
| tformshapes | Source code |
| tostanarray | Source code |
| unfoldmats | Source code |
| whichsubjectpars | Source code |
