GUTS_IT | R Documentation |
Full General Unified Threshold models of Survival (GUTS) with Individual Tolerance
compatible with the Full GUTS model as described by EFSA (2018), but
some parameter names may differ.
GUTS_IT(scaled_ci = FALSE, dose_metric = c("D", "Ci", "Cw"))
scaled_ci |
|
dose_metric |
|
an S4 object of type GutsIt-class
The following list describes the default names and standard units of GUTS state variables:
Ci
, (scaled) internal concentration (conc)
D
, (scaled) damage (*)
H
, cumulative hazard (-)
The state variables are initialized with zero by default.
The set of parameters and their names follows the definition by Jager et al (2011). The actual number of required parameters depends on the selected model variant, i.e. if the internal concentration is scaled or not, as well as the selected dose metric. The full set of parameters is as follows
ki
, accumulation rate into body (time^-1)
ke
, elimination rate (time^-1)
Kiw
, scaling constant for external concentration (*)
kr
, damage recovery rate (time^-1)
hb
, background hazard rate (time^-1)
alpha
, median of thresholds (conc)
beta
, shape parameter (-)
The effect endpoint L
(lethality) is available for GUTS models.
A value of zero (0.0
) denotes no effect on organism survival. A value of
one (1.0
) denotes a lethality rate of 100%, i.e. no survivors.
The survival probability S
is available in the return value of simulate()
.
EFSA PPR Panel (EFSA Panel on Plant Protection Products and their Residues), Ockleford C, Adriaanse P, Berny P, et al., 2018: Scientific Opinion on the state of the art of Toxicokinetic/Toxicodynamic (TKTD) effect models for regulatory risk assessment of pesticides for aquatic organisms. EFSA Journal 2018; 16(8):5377, 188 pp. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.2903/j.efsa.2018.5377")}
Jager T., Albert C., Preuss T.G., and Ashauer R., 2011: General Unified Threshold Model of Survival - a Toxicokinetic-Toxicodynamic Framework for Ecotoxicology. Environ. Sci. Technol. 45(7), pp. 2529-2540. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/es103092a")}
GUTS-RED-IT
Other GUTS models:
GUTS_SD()
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