Files in cvasi

Calibration, Validation, and Simulation of TKTD Models

MD5

NEWS.md

NAMESPACE

DESCRIPTION

R/dose_response.R R/sequence.R R/show.R R/get.R R/class-Deb.R R/calibrate.R R/class-GutsRed.R R/set_transfer.R R/set_exposure.R R/solver.R R/utils-pipe.R R/set_init.R R/is.R R/class-CalibrationSet.R R/lik_profile.R R/epx.R R/set_bounds.R R/import_toxswa.R R/set_window.R R/data.R R/simulate.R R/pll.R R/model-debtox.R R/model-deb_daphnia.R R/set_forcings.R R/set_param.R R/class-ScenarioSequence.R R/class-Algae.R R/survival.R R/morse.R R/class-Myriophyllum.R R/log.R R/has.R R/effect.R R/package.R R/plotting.r R/class-Transferable.R R/pull.R R/class-Lemna.R R/cache_controls.R R/import.R R/globals.R R/explore_space.R R/helper_functions.r R/class-ExposureSeries.R R/class-parameter_set.R R/class-EffectScenario.R R/fx.R R/set.R

src/deb_abj.c

src/cvasi_init.c

src/guts_red_sd.c

src/algae_simple.c

src/lemna_schmitt.c

src/guts_red_it.c

src/algae_weber.c

src/myriophyllum.c

src/algae_TKTD.c

src/debtox.c

inst/debtox_license.txt

inst/doc/cvasi-2-howto.R

inst/doc/cvasi-2-howto.html

inst/doc/cvasi-1-manual.html

inst/doc/cvasi-1-manual.R inst/doc/cvasi-1-manual.Rmd inst/doc/cvasi-2-howto.Rmd

build/vignette.rds

build/partial.rdb

tests/testthat.R

tests/data/DEBtox_Daphnia/test_surv.txt

tests/data/DEBtox_Daphnia/test_length.txt

tests/data/DEBtox_Daphnia/Data_exposure_profile_Dmagna_TFS_Var2.txt

tests/data/DEBtox_Daphnia/Data_exposure_profile_Dmagna_TFS_Var1.txt

tests/data/DEBtox_Daphnia/test_damage.txt

tests/data/DEBtox_Daphnia/test_repro.txt

tests/data/DEBtox_Daphnia/README.txt

tests/data/DEBtox_Daphnia/Data_exposure_profile_Dmagna_TFS_Cst.txt

tests/data/EFSA_propiconazole/import.R

tests/data/EFSA_propiconazole/readme.txt

tests/data/TOXSWA/testonil.out

tests/testthat/test-clip.R tests/testthat/test-simulate_sequence.R tests/testthat/test-set_param.R tests/testthat/test-lik_profile.R tests/testthat/test-windows.R tests/testthat/test-simulate_DEBtox.R tests/testthat/test-verify_guts.R tests/testthat/test-log_lik.R tests/testthat/test-explore_space.R tests/testthat/test-get.R tests/testthat/test-import_toxswa.R tests/testthat/test-effect.R tests/testthat/test-set_transfer.R tests/testthat/test-parameter_set.R tests/testthat/test-simulate_transfer.R tests/testthat/test-set_bounds.R tests/testthat/init-simulate_Daphnia.R tests/testthat/test-has.R tests/testthat/test-calibrate.R tests/testthat/test-survival.R tests/testthat/test-is.R tests/testthat/test-solver.R tests/testthat/test-epx.R tests/testthat/test-sequence.R tests/testthat/test-cache.R tests/testthat/test-simulate_Lemna.R tests/testthat/test-simulate_Algae_simple.R tests/testthat/test-set.R tests/testthat/test-simulate_AlgaeTKTD.R tests/testthat/test-simulate_Weber.R tests/testthat/class-DummyScenario.R tests/testthat/morse_guts-red.R tests/testthat/test-simulate_batch.R tests/testthat/_snaps/verify_guts.md vignettes/cvasi-1-manual.Rmd vignettes/cvasi-2-howto.Rmd

data/dmagna.rda

data/americamysis.rda

data/minnow_it.rda

data/metsulfuron.rda

data/focusd1.rda

data/Rsubcapitata.rda

data/Schmitt2013.rda

data/minnow_sd.rda

man/plot_scenario.Rd man/set_param.Rd man/get_tag.Rd man/GUTS_RED_IT.Rd man/epx.Rd man/metsulfuron.Rd man/GUTS-RED-models.Rd man/dmagna.Rd man/set_exposure.Rd man/set_bounds.Rd man/log_scenarios.Rd man/fx.Rd man/morse.Rd man/solver.Rd man/plot_epx.Rd man/dose_response.Rd man/effect.Rd man/Lemna-models.Rd man/Myrio.Rd man/sequence.Rd man/set_tag.Rd man/Myrio_log.Rd man/DEB-models.Rd man/set_endpoints.Rd man/Algae_Simple.Rd man/set_forcings.Rd man/is_scenario.Rd man/Myriophyllum-models.Rd man/pull_metadata.Rd man/Algae-models.Rd man/calibrate.Rd man/parameter_set.Rd man/DEBtox.Rd man/import_exposure_text.Rd man/set_times.Rd man/Transferable.Rd man/is_DEB.Rd man/log_envir.Rd man/CalibrationSet.Rd man/set_transfer.Rd man/focusd1.Rd man/plot_sd.Rd man/Schmitt2013.Rd man/is_LemnaThreshold.Rd man/import_toxswa.Rd man/GUTS_RED_SD.Rd man/plot_lik_profile.Rd man/Lemna_Schmitt.Rd man/ExposureSeries.Rd man/no_exposure.Rd man/log_lik.Rd man/Lemna_SETAC.Rd man/DEB_abj.Rd man/Algae_Weber.Rd man/import_swash.Rd man/plot_param_space.Rd man/explore_space.Rd man/is_Lemna.Rd man/simulate_batch.Rd man/pipe.Rd man/americamysis.Rd man/Macrophyte-models.Rd man/simulate.Rd man/Rsubcapitata.Rd man/lik_profile.Rd man/minnow_sd.Rd man/minnow_it.Rd man/pll_debug.Rd man/Algae_TKTD.Rd man/set_mode_of_action.Rd man/set_noexposure.Rd man/Scenarios.Rd man/plot_ppc_combi.Rd man/cache_controls.Rd man/log_msg.Rd man/log_enable.Rd man/survival.Rd man/set_init.Rd man/plot_ppc.Rd man/epx_mtw.Rd man/is_GUTS.Rd man/get_model.Rd man/set_window.Rd

cvasi documentation built on Sept. 23, 2024, 9:08 a.m.