import_morse: Import 'morse' model parameters

In cvasi: Calibration, Validation, and Simulation of TKTD Models

Import morse model parameters

Description

Loads GUTS model parameters which were fitted by the morse package.

Usage

import_morse(
  fit,
  find_sd = TRUE,
  find_it = TRUE,
  reset_hb = FALSE,
  params = c("estim", "all"),
  mcmc_size,
  find.SD = deprecated(),
  find.IT = deprecated(),
  reset.hb = deprecated(),
  mcmc.size = deprecated(),
  file = deprecated()
)

morse(...)

Arguments

fit	Either a string with a file path to an .Rdata or .RDS file containing a morse fit, or a morse fit object itself
find_sd	a logical value. If TRUE, it will try to find fitted parameters of a GUTS-RED-SD model
find_it	a logical value. If TRUE, it will try to find fitted parameters of a GUTS-RED-IT model
reset_hb	a logical value. If TRUE, the background hazard rate hb is set to zero
params	character, if set to "estim" then only the best-fit parameters are imported, else all parameter sets in the MCM chains are returned
mcmc_size	optional integer, sets the maximum number of imported parameter sets per MCMC. By default, all MSMS parameter samples are imported.
find.SD	deprecated⁠,⁠ alias for parameter find_sd
find.IT	deprecated⁠,⁠ alias for parameter find_it
reset.hb	deprecated⁠,⁠ alias for parameter rest_hb
mcmc.size	deprecated⁠,⁠ alias for parameter mcmc_size
file	deprecated⁠,⁠ alias for parameter fit
...	Arguments passed on to import_morse()

Value

list of parameter_set objects

Functions

• morse(): deprecated alias

Examples

# import all parameter fits
try(import_morse("path/to/morse_fit.RData"))

# import parameters for a specific model
try(import_morse("path/to/morse_fit.RData", find_it=TRUE, find_sd=FALSE))

# modify model objects
try(models %>% set_param(import_morse("path/to/morse_fit.RData")))

cvasi documentation built on Sept. 11, 2025, 5:11 p.m.