debris_nc: gates out or assign indicators to debris particle.

Description Usage Arguments Details Value See Also

View source: R/debris_nc.R

Description

The function takes in a flowframe and identifies debris contained in the provided flowframe.

Usage

1
debris_nc(flowframe, p1, p2)

Arguments

flowframe

flowframe with debris and other cells.

p1

first flowcytometer channel that can be used to separate debris from the rest, e.g. "RED.B.HLin".

p2

second flowcytometer channel that can be used to separate debris from the rest, e.g. "YEL.B.HLin"

Details

The function uses the getPeaks and deGate functions in the flowDensity package to identify peaks between peaks and identify cut-off points between these peaks. A plot of both channels supplied with horizontal line separating debris from other cell populations is also returned.

Value

list containing;

See Also

debris_inc


cyanoFilter documentation built on Jan. 9, 2020, 5:08 p.m.