Description Usage Arguments Examples
View source: R/plotting_functions.R
plots the expression matrix of a flowframe. Note that, it takes some time to display the plot.
1 |
flowfile |
flowframe to be plotted |
notToPlot |
column in expression matrix not to be plotted |
1 2 3 4 5 6 7 8 9 10 | flowfile_path <- system.file("extdata", "text.fcs", package = "cyanoFilter",
mustWork = TRUE)
flowfile <- flowCore::read.FCS(flowfile_path, alter.names = TRUE,
transformation = FALSE, emptyValue = FALSE,
dataset = 1) #FCS file contains only one data object
flowfile_nona <- cyanoFilter::nona(x = flowfile)
flowfile_noneg <- cyanoFilter::noneg(x = flowfile_nona)
flowfile_logtrans <- lnTrans(x = flowfile_noneg, c('SSC.W', 'TIME'))
pair_plot(x = flowfile_logtrans,
notToPlot = c("TIME", "FSC.HLin", "RED.R.HLin", "NIR.R.HLin"))
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