onto.GOBP: Gene Ontology Biological Process (GOBP).

Description Usage Value References Examples

Description

An R object that contains information on Gene Ontology Biological Process terms. These terms are organised as a direct acyclic graph (DAG), which is further stored as an object of the class 'igraph' (see http://igraph.org/r/doc/aaa-igraph-package.html). This data is prepared based on http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology.1_2.obo. Only the edges with the relation (either 'is_a' or 'part_of') are retained.

Usage

1

Value

an object of S4 class Onto. It has slots for "nodeInfo" and "adjMatrix"

References

Ashburner et al. (2000) Gene ontology: tool for the unification of biology. Nat Genet, 25:25-29.
Fang H and Gough J. (2013) dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. Nucleic Acids Res, 41(Database issue):D536-44.

Examples

1
2

dcGOR documentation built on May 30, 2017, 7:09 a.m.

Related to onto.GOBP in dcGOR...