tests/testthat/test-coord_geo_radial.R

In deeptime: Plotting Tools for Anyone Working in Deep Time

skip_if_not_installed("ggtree")

test_that("coord_geo_radial works", {
  skip_if_not_installed("ape")
  gg <- revts(ggtree(tree)) +
    coord_geo_radial(dat = "stages", expand = FALSE) +
    scale_y_continuous(guide = "none", breaks = NULL) +
    theme_gray()
  expect_true(is.ggplot(gg))
  expect_true(is(ggplot_build(gg)$layout$coord, "CoordGeoRadial"))
  expect_doppelganger_deeptime("coord_geo_radial", gg)
  skip_if_not_installed("phytools")
  expect_equal(ggplot_build(gg)$layout$panel_params[[1]]$r.range,
               c(-max(nodeHeights(tree)), 0))
})

test_that("stacking scales works", {
  skip_if_not_installed("phytools")
  gg <- revts(ggtree(mammal.tree)) +
    coord_geo_radial(
      dat = list("stages", "periods"), alpha = .5,
      prop = list(0.75, .25), start = pi / 4, end = 2 * pi, lty = "dashed"
    ) +
    scale_y_continuous(expand = expansion(mult = c(0.02, 0.02)),
                       guide = "none", breaks = NULL) +
    theme_gray()
  expect_doppelganger_deeptime("stacked scales", gg)
})

test_that("ggtree scale works with only fossil taxa", {
  skip_if_not_installed("paleotree")
  skip_if_not_installed("geomtextpath")
  gg <- ggtree(ceratopsianTreeRaia,
               position = position_nudge(x = -ceratopsianTreeRaia$root.time)) +
    coord_geo_radial(dat = "stages") +
    scale_y_continuous(guide = "none", breaks = NULL) +
    theme_gray() +
    theme(panel.grid.major = element_blank())
  expect_doppelganger_deeptime("scale on fossil ggtree", gg)
  skip_if(R.Version()$os != "mingw32") # only test this on Windows
  gg <- ggtree(ceratopsianTreeRaia,
               position = position_nudge(x = -ceratopsianTreeRaia$root.time)) +
    coord_geo_radial(dat = list("stages", "periods"), lab = list(FALSE, TRUE),
                     abbrv = TRUE) +
    scale_x_continuous(expand = expansion(add = c(20, 30))) +
    scale_y_continuous(guide = "none", breaks = NULL) +
    theme_gray() +
    theme(panel.grid.major = element_blank())
  expect_doppelganger_deeptime("scale on fossil ggtree with labels", gg)
})