API for detectRUNS
Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes
| Global functions | |
|---|---|
| .onAttach | Source code |
| Froh_inbreeding | Man page |
| Froh_inbreedingClass | Man page |
| chromosomeLength | Man page Source code |
| consecutiveRUNS.run | Man page Source code |
| consecutiveRuns | Man page Source code |
| consecutiveRunsCpp | Man page Source code |
| createRUNdf | Man page Source code |
| fast_factor | Source code |
| findOppositeAndMissing | Man page Source code |
| genoConvert | Man page Source code |
| genoConvertCpp | Man page Source code |
| heteroZygotTest | Man page Source code |
| heteroZygotTestCpp | Man page Source code |
| homoZygotTest | Man page Source code |
| homoZygotTestCpp | Man page Source code |
| pedConvertCpp | Man page Source code |
| plot_DistributionRuns | Man page |
| plot_InbreedingChr | Man page |
| plot_PatternRuns | Man page Source code |
| plot_Runs | Man page Source code |
| plot_SnpsInRuns | Man page Source code |
| plot_StackedRuns | Man page Source code |
| plot_ViolinRuns | Man page |
| plot_manhattanRuns | Man page Source code |
| readExternalRuns | Man page Source code |
| readPOPCpp | Man page Source code |
| reorderDF | Man page Source code |
| slidingRUNS.run | Man page Source code |
| slidingRuns | Man page Source code |
| slidingWindow | Man page Source code |
| slidingWindowCpp | Man page Source code |
| snpInRun | Man page Source code |
| snpInRunCpp | Man page Source code |
| snpInsideRuns | Man page Source code |
| snpInsideRunsCpp | Man page Source code |
| summaryRuns | Man page |
| tableRuns | Man page |
| writeRUN | Man page Source code |
