snpInRun: Function to return a vector of T/F for whether a SNP is or...
In detectRUNS: Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes
Description
Usage
Arguments
Value
Description
This is a core function. The function to determine whether a SNP is or not in a RUN.
The ratio between homozygous/heterozygous windows and total n. of windows is computed here
Usage
1
snpInRun(RunVector, windowSize, threshold)
Arguments
RunVector
vector of TRUE/FALSE (is a window homozygous/heterozygous?)
windowSize
size of window (n. of SNP)
threshold
threshold to call a SNP in a RUN
Value
vector of TRUE/FALSE (whether a SNP is in a RUN or NOT)
detectRUNS documentation built on Oct. 30, 2019, 11:41 a.m.
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Description Usage Arguments Value
Description
This is a core function. The function to determine whether a SNP is or not in a RUN. The ratio between homozygous/heterozygous windows and total n. of windows is computed here
Usage
1 | snpInRun(RunVector, windowSize, threshold)
|
Arguments
RunVector |
vector of TRUE/FALSE (is a window homozygous/heterozygous?) |
windowSize |
size of window (n. of SNP) |
threshold |
threshold to call a SNP in a RUN |
Value
vector of TRUE/FALSE (whether a SNP is in a RUN or NOT)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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