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# Gompertz function -------------------------------------------------------
#
# References
# Jukic, D., Kralik, G. and Scitovski, R., 2004. Least-squares fitting Gompertz
# curve. Journal of Computational and Applied Mathematics, 169, 359-375.
#
# author Oliver Schaer, info@oliverschaer.ch
# author Nikolaos Kourentzes, nikolaos@kourentzes.com
gompertzCurve <- function(n, w){
# Generate Gompertz curve
# n, sample size
# w, vector of parameters
t <- 1:n
# Cumulative
At <- w[3] * exp(-w[1] * exp(-w[2] * t))
# At <- w[3] * exp(-exp(-(w[1] + (w[2] *t))))
# Adoption
at <- diff(c(0, At))
Y <- cbind(At, at)
colnames(Y) <- c("Cumulative Adoption", "Adoption")
return(Y)
}
gompertzInit <- function(x, l){
# Internal function: get initial values
# get approximation of initial values using Jukic et al. 2004 approach adopted
# m to allow for x to be adoption per period
n <- length(x)
X <- cumsum(x)
# get largest distance between t1 and t3 possible, t2 = (t1 + t3)/2
t0 <- c(1, floor((1 + n)/2), n)
x0 <- X[t0]
# make sure that all values are slightly different
if(anyDuplicated(x0) > 0){
x0[anyDuplicated(x0)] <- x0[anyDuplicated(x0)]+(x0[anyDuplicated(x0)]*0.00001)
}
# m <- (x0[1]) - ((((x0[2]) - (x0[1]))^2)/((x0[3]) - (2 * (x0[2])) + (x0[1])))
# m <- exp(log(x0[1]) - (((log(x0[2]) - log(x0[1]))^2) / (log(x0[3]) - (2*log(x0[2])) + log(x0[1]))))
# calling bass estimates
what <- diffusionEstim(x, l, pvalreps = 0, type = "bass")$w
m <- what[3]
a <- ((-(log(x0[2]) - log(x0[1]))^2)/(log(x0[3]) - (2 * log(x0[2])) +
log(x0[1]))) * ((log(x0[2]) - log(x0[1]))/(log(x0[3]) -
log(x0[2])))^(2 * t0[1]/(t0[3] - t0[1]))
b <- (-2/(t0[3] - t0[1])) * log((log(x0[3]) -
log(x0[2]))/(log(x0[2]) - log(x0[1])))
w <- c(a, b, m)
names(w) <- c("a", "b", "m")
# a <- log(x0[1]) - (((log(x0[2]) - log(x0[1]))^2) / (log(x0[3]) - (2*log(x0[2])) + log(x0[1])))
#
# b <- ((-(log(x0[2]) - log(x0[1]))^2) / (log(x0[3]) - (2*log(x0[2])) + log(x0[1]))) *
# ((log(x0[2]) - log(x0[1])) / (log(x0[3]) - log(x0[2])))^(2*t0[1] / (t0[3]-t0[1]))
return(w)
}
gompertzCost <- function(w, x, l, w.idx = rep(TRUE, 3), prew = NULL, cumulative=c(TRUE,FALSE)){
# Internal function: cost function for numerical optimisation
# w, current parameters
# x, adoption per period
# l, the l-norm (1 is absolute errors, 2 is squared errors)
# w.idx, logical vector with three elements. Use FALSE to not estimate
# respective parameter
# prew, the w of the previous generation - this is used for sequential fitting
# cumulative, use cumulative adoption or not
cumulative <- cumulative[1]
n <- length(x)
# If some elements of w are not optimised, sort out vectors
w.all <- rep(0, 3)
w.all[w.idx] <- w
# If sequential construct total parameters
if (is.null(prew)){
gompw <- w.all
} else {
gompw <- w.all + prew
}
fit <- gompertzCurve(n, gompw)
if (cumulative == FALSE){
if (l == -1) {
se <- x - fit[,2]
se <- sum(se[se>0]) + sum(-se[se<0])
} else if (l == 1){
se <- sum(abs(x-fit[, 2]))
} else if (l == 2){
se <- sum((x-fit[, 2])^2)
} else {
se <- sum(abs(x-fit[, 2])^l)
}
} else {
if (l == -1) {
se <- cumsum(x) - fit[,1]
se <- sum(se[se>0]) + sum(-se[se<0])
} else if (l == 1){
se <- sum(abs(cumsum(x)-fit[, 1]))
} else if (l == 2){
se <- sum((cumsum(x)-fit[, 1])^2)
} else {
se <- sum(abs(cumsum(x)-fit[, 1])^l)
}
}
# Ensure positive coefficients
if (any(gompw <= 0)){
se <- 10e200
}
return(se)
}
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