directPA: Direction Analysis for Pathways and Kinases
Version 1.3

Direction analysis is a set of tools designed to identify combinatorial effects of multiple treatments and/or perturbations on pathways and kinases profiled by microarray, RNA-seq, proteomics, or phosphoproteomics data.

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AuthorPengyi Yang & Ellis Patrick
Date of publication2016-03-23 22:50:28
MaintainerPengyi Yang <yangpy7@gmail.com>
LicenseGPL-3
Version1.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("directPA")

Man pages

directExplorer2d: Batch Direction Analysis in 2-dimentional space
directPA: Direction Analysis for Pathways
directPA-package: Direction Pathway Analysis Package
geneStats: Molecule Level Statistics
HEK: Phosphoproteomics of HEK-293E
kinasePA: Direction Analysis for Kinases
Pathways.KEGG: KEGG pathway annotations
Pathways.reactome: Reactome pathway annotations
pathwayStats: Pathway Level Statistics
perturbPlot2d: Perturbation Plot
PhosphoELM.human: PhosphoELM annotations for human
PhosphoELM.mouse: PhosphoELM annotations for mouse
PhosphoSite.human: PhosphoSitePlus annotations for human
PhosphoSite.mouse: PhosphoSitePlus annotations for mouse
PM: Plasma Membrame Protoemics Data
rotate2d: Polar Coordinates Rotation
rotate3d: Spherical Coordinates Rotation

Functions

HEK Man page
PM Man page
Pathways.KEGG Man page
Pathways.reactome Man page
PhosphoELM.human Man page
PhosphoELM.mouse Man page
PhosphoSite.human Man page
PhosphoSite.mouse Man page
directExplorer2d Man page Source code
directPA Man page Source code
directPA-package Man page
geneStats Man page Source code
kinasePA Man page Source code
pathwayStats Man page Source code
perturbPlot2d Man page Source code
rotate2d Man page Source code
rotate3d Man page Source code

Files

NAMESPACE
data
data/PM.rda
data/Pathways.rda
data/PhosphoELM.rda
data/HEK.rda
data/PhosphoSite.rda
R
R/directExplorer2d.R
R/rotate3d.R
R/perturbPlot2d.R
R/kinasePA.R
R/rotate2d.R
R/geneStats.R
R/directPA.R
R/pathwayStats.R
README.md
MD5
DESCRIPTION
man
man/PhosphoELM.human.Rd
man/directPA-package.Rd
man/Pathways.KEGG.Rd
man/HEK.Rd
man/pathwayStats.Rd
man/directPA.Rd
man/perturbPlot2d.Rd
man/rotate2d.Rd
man/Pathways.reactome.Rd
man/geneStats.Rd
man/PhosphoSite.human.Rd
man/PhosphoSite.mouse.Rd
man/rotate3d.Rd
man/kinasePA.Rd
man/PhosphoELM.mouse.Rd
man/PM.Rd
man/directExplorer2d.Rd
directPA documentation built on May 19, 2017, 4:28 p.m.