makeMatchedOrtholog: Create an object of class matchedOrtholog
In disco: Discordance and Concordance of Transcriptomic Responses

Description Usage Arguments Details See Also

Create an object representing regulation in two sets of genes (e.g. from two organisms).

1 2	makeMatchedOrtholog(names, genes, lfc1, lfc2, pval1, pval2, row.names = NULL, extra = NULL)

`names`	character vector with names of the matched sets
`genes`	names associated with the ortholog pairs
`lfc1, lfc2`	log fold changes or effect sizes
`pval1, pval2`	vectors of p values for the two data sets
`row.names`	character vector to be used as row names for the data set
`extra`	a data frame or a vector with the same length or number of rows as "genes"

The object contains a mapping between two sets of genes and the associated effect sizes (i.e. log fold changes) and p-values used to calculate disco score and other statistics.

matchedOrtholog-class

disco documentation built on May 2, 2019, 9:40 a.m.