plotDisco: plots log2FC of the corresponding genes against each other

Description Usage Arguments Value Examples

Description

Creates a plot of log2FC of the chosen genes in one data set against log2FC of corresponding genes in the other data set. Each dot represents a gene and is colored according to disco.score calculated for this pair of heterologous genes: the stronger is red color the more concordantly regulated is the gene pair, and the stronger is the blue color, the more discordantly regulated is the gene pair.

Usage

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Arguments

x

an object of class matchedOrtholog

disco.score

a numerical vector of values of disco.score assigned to each orthologous gene pair, ordered according to the gene order in matchedOrtholog object

g

either a vector of gene names of genes of interest

Value

plot

Examples

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library(tmod)
data(tmod)
data(orthologs)
ds <- disco.score(orthologs)
plotDisco(orthologs, ds, tmod$MODULES2GENES[["LI.M1.0"]])

Example output

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl_init' failed, running with rgl.useNULL = TRUE 
3: .onUnload failed in unloadNamespace() for 'rgl', details:
  call: fun(...)
  error: object 'rgl_quit' not found 

disco documentation built on May 2, 2019, 9:40 a.m.