plotDisco: plots log2FC of the corresponding genes against each other

In disco: Discordance and Concordance of Transcriptomic Responses

Description

Creates a plot of log2FC of the chosen genes in one data set against log2FC of corresponding genes in the other data set. Each dot represents a gene and is colored according to disco.score calculated for this pair of heterologous genes: the stronger is red color the more concordantly regulated is the gene pair, and the stronger is the blue color, the more discordantly regulated is the gene pair.

Usage

plotDisco(x, disco.score, g = NULL)

Arguments

x	an object of class matchedOrtholog
disco.score	a numerical vector of values of disco.score assigned to each orthologous gene pair, ordered according to the gene order in matchedOrtholog object
g	either a vector of gene names of genes of interest

Value

plot

Examples

library(tmod)
data(tmod)
data(orthologs)
ds <- disco.score(orthologs)
plotDisco(orthologs, ds, tmod$MODULES2GENES[["LI.M1.0"]])

Example output

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl_init' failed, running with rgl.useNULL = TRUE 
3: .onUnload failed in unloadNamespace() for 'rgl', details:
  call: fun(...)
  error: object 'rgl_quit' not found 

disco documentation built on May 2, 2019, 9:40 a.m.