makeSummary: Common modules in specified comparisons

Description Usage Arguments Value Examples

Description

Summarize numbers of enriched modules in an unrestricted number of comparisons and list all the modules that belong to intersection of specified comparisons.

Usage

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Arguments

...

any number of data frames created as a result of tmodCERNOtest functions

Value

list of two elements: RowN - list, each element of it contains number of rows in every subsequent comparison, int character vector with IDs of all modules belonging to the intersection of comparisons provided as the input

Examples

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library(tmod)
data(tmod)
data(orthologs)
disco <- disco.score(orthologs)
g <- toupper(orthologs$genes)
concordant <- tmodCERNOtest(g[order(disco, decreasing = TRUE)])
discordant <- tmodCERNOtest(g[order(disco)])
sum1 <- makeSummary(concordant, discordant)

disco documentation built on May 2, 2019, 9:40 a.m.