Description Usage Arguments Value Examples
Summarize numbers of enriched modules in an unrestricted number of comparisons and list all the modules that belong to intersection of specified comparisons.
1 |
... |
any number of data frames created as a result of tmodCERNOtest functions |
list of two elements: RowN - list, each element of it contains number of rows in every subsequent comparison, int character vector with IDs of all modules belonging to the intersection of comparisons provided as the input
1 2 3 4 5 6 7 8 | library(tmod)
data(tmod)
data(orthologs)
disco <- disco.score(orthologs)
g <- toupper(orthologs$genes)
concordant <- tmodCERNOtest(g[order(disco, decreasing = TRUE)])
discordant <- tmodCERNOtest(g[order(disco)])
sum1 <- makeSummary(concordant, discordant)
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